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The map label for this gene is virB10 [H]

Identifier: 148284002

GI number: 148284002

Start: 4099

End: 5628

Strand: Direct

Name: virB10 [H]

Synonym: OTBS_0005

Alternate gene names: 148284002

Gene position: 4099-5628 (Clockwise)

Preceding gene: 148284001

Following gene: 148284003

Centisome position: 0.19

GC content: 31.31

Gene sequence:

>1530_bases
ATGCAAAATATTAATAACGATTCTAATCAAGATCCACAGGGCCAATATGATCATTCTGAGGATTCTAAAGTAGTTGGACC
AGAAGTACATAATGAATTTTCAAAAGTTGCATCTAGTGCTAAAAGGAGTGTTTTATTAACGATAGTAATAGTAGTTATAT
CCATTGTAATACTATATTTCGTAATCTCTAGTATCTTTATTGACGAAAGTCATAAAGAGGAAAGTATAGCTGTTCCAGTA
CCAGTTGATGTTATCAAGCCAAATATTGAATTATCAGGAGATATTGTTATACCAGAATTACCTACGATACCTACTCTGAT
AACTCCAGAATTGCCAGAAATAAAAGTACCAGATCAAGCAAAATTAAATAACTTGAATAACGATAACTCTAGTAAAGATG
AAGTGGTTCAGTCCAATAAACTGCCAAAAGAATCGAAGTTAATTAAGCCACCAGTTTTACCATTAACAGAACAAGGTGAG
TATAATAACGCTAAACAAGATGCTAAAATACCTTCATTAGACTTATCTGCTCAAACTAAAGATAGAGCTGCTCGTTTACA
GGAAAAAAGAACATCTACTAATATTGTGCTAATTAATAAATCTCCTCCTTCTCCAACAAGAGAAGAAATGGAGCAGATAA
GAAATTTTACTGATGCAGGAGAACTAAGATATTTATTGGGAAGGGGAACAGTAATTGATGCAGTAATTATAAGTGCAGTA
AACTCTGATTTTATTGGAGAGATAGTAGCTATGGTAAGTAAAGATGTTTACTCTCAAGAAGGAAAAACTGTCTTAATTCC
AAGAGGCTCAAAAATTTTTGGTTATCCTAGTGTATTAGATAATGCCGCTTATGGCAGAATGATGATTACTTGGTCAGAAG
TACAGATTGCAGGTAGTCAATATAAACTAAATTTATCTGCTCCAACTATTGATAGATTAGGCAAAATAGGAGTTACAGGG
AAAGTTAATAATAAAAACTTAGCAAGAATTATGCATGCTGTTTTAGTATCAGCTGTTAATATAGGTGCAGCATTTACACT
CGATAAAGTAGTAGCGTTACAGCAACAGATGGCTAATACAACTAGTGGCCTCACTGGTACGTTAATTAAAAATGCGATGA
ATATTAACAATGATTCTGTAAAGAGTGATAGTCAAAAGATAACAGAGATTTGCGGTATGAGTCGTAGTCTTATAACTGAT
AAATCATCATCTGTATATACTACTATCAATAAAAAATGCATGGAAATTGAGACATCAATAATAGCAAATGTAGACGATAA
ACAAAAGCTATCATCTTTAATAAATACAATTATTAATATCTCAAATTCTACTGCTAATAATAGCAATAGTAATACTCAGA
AAGCAACTGATACTGCTTTAAACGATGTAGTTAATGCAATAAAAAAAATAATTCCAAGTCAAGAATTTAATAGAACTATT
ACTCTTAATCAAGGACAGAATATTAAAATATATGTTAACAAAGATTATTTGTTTCCAACAAAAGCAGTTAGTGGAGTAAA
AGTACTCTAA

Upstream 100 bases:

>100_bases
ATATTGTATCTAAGGAGCTAGAAGTAGGGCGTGAACATGACTTAGTTTATTTAATTAGATTTTATTATCCACAAAAGAAA
GCGTGCAATAAAGAAAAGTA

Downstream 100 bases:

>100_bases
TGAAGAATAATATTGCACTTGAAACCTATTTAACTCCTTTTAAATTAATTTTTGATGAAGCAGGAGTAAATGAGGTGATG
ATTAACCGCCCTGGTGAGGT

Product: type IV secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MQNINNDSNQDPQGQYDHSEDSKVVGPEVHNEFSKVASSAKRSVLLTIVIVVISIVILYFVISSIFIDESHKEESIAVPV
PVDVIKPNIELSGDIVIPELPTIPTLITPELPEIKVPDQAKLNNLNNDNSSKDEVVQSNKLPKESKLIKPPVLPLTEQGE
YNNAKQDAKIPSLDLSAQTKDRAARLQEKRTSTNIVLINKSPPSPTREEMEQIRNFTDAGELRYLLGRGTVIDAVIISAV
NSDFIGEIVAMVSKDVYSQEGKTVLIPRGSKIFGYPSVLDNAAYGRMMITWSEVQIAGSQYKLNLSAPTIDRLGKIGVTG
KVNNKNLARIMHAVLVSAVNIGAAFTLDKVVALQQQMANTTSGLTGTLIKNAMNINNDSVKSDSQKITEICGMSRSLITD
KSSSVYTTINKKCMEIETSIIANVDDKQKLSSLINTIINISNSTANNSNSNTQKATDTALNDVVNAIKKIIPSQEFNRTI
TLNQGQNIKIYVNKDYLFPTKAVSGVKVL

Sequences:

>Translated_509_residues
MQNINNDSNQDPQGQYDHSEDSKVVGPEVHNEFSKVASSAKRSVLLTIVIVVISIVILYFVISSIFIDESHKEESIAVPV
PVDVIKPNIELSGDIVIPELPTIPTLITPELPEIKVPDQAKLNNLNNDNSSKDEVVQSNKLPKESKLIKPPVLPLTEQGE
YNNAKQDAKIPSLDLSAQTKDRAARLQEKRTSTNIVLINKSPPSPTREEMEQIRNFTDAGELRYLLGRGTVIDAVIISAV
NSDFIGEIVAMVSKDVYSQEGKTVLIPRGSKIFGYPSVLDNAAYGRMMITWSEVQIAGSQYKLNLSAPTIDRLGKIGVTG
KVNNKNLARIMHAVLVSAVNIGAAFTLDKVVALQQQMANTTSGLTGTLIKNAMNINNDSVKSDSQKITEICGMSRSLITD
KSSSVYTTINKKCMEIETSIIANVDDKQKLSSLINTIINISNSTANNSNSNTQKATDTALNDVVNAIKKIIPSQEFNRTI
TLNQGQNIKIYVNKDYLFPTKAVSGVKVL
>Mature_509_residues
MQNINNDSNQDPQGQYDHSEDSKVVGPEVHNEFSKVASSAKRSVLLTIVIVVISIVILYFVISSIFIDESHKEESIAVPV
PVDVIKPNIELSGDIVIPELPTIPTLITPELPEIKVPDQAKLNNLNNDNSSKDEVVQSNKLPKESKLIKPPVLPLTEQGE
YNNAKQDAKIPSLDLSAQTKDRAARLQEKRTSTNIVLINKSPPSPTREEMEQIRNFTDAGELRYLLGRGTVIDAVIISAV
NSDFIGEIVAMVSKDVYSQEGKTVLIPRGSKIFGYPSVLDNAAYGRMMITWSEVQIAGSQYKLNLSAPTIDRLGKIGVTG
KVNNKNLARIMHAVLVSAVNIGAAFTLDKVVALQQQMANTTSGLTGTLIKNAMNINNDSVKSDSQKITEICGMSRSLITD
KSSSVYTTINKKCMEIETSIIANVDDKQKLSSLINTIINISNSTANNSNSNTQKATDTALNDVVNAIKKIIPSQEFNRTI
TLNQGQNIKIYVNKDYLFPTKAVSGVKVL

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 55603; Mature: 55603

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNINNDSNQDPQGQYDHSEDSKVVGPEVHNEFSKVASSAKRSVLLTIVIVVISIVILYF
CCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VISSIFIDESHKEESIAVPVPVDVIKPNIELSGDIVIPELPTIPTLITPELPEIKVPDQA
HHHHHHHCCCCCCCCEEECCCHHHCCCCCEECCCEECCCCCCCCCEECCCCCCCCCCCHH
KLNNLNNDNSSKDEVVQSNKLPKESKLIKPPVLPLTEQGEYNNAKQDAKIPSLDLSAQTK
HHCCCCCCCCCHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHH
DRAARLQEKRTSTNIVLINKSPPSPTREEMEQIRNFTDAGELRYLLGRGTVIDAVIISAV
HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHH
NSDFIGEIVAMVSKDVYSQEGKTVLIPRGSKIFGYPSVLDNAAYGRMMITWSEVQIAGSQ
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHHCCCCCCEEEEEEEEEEEECCE
YKLNLSAPTIDRLGKIGVTGKVNNKNLARIMHAVLVSAVNIGAAFTLDKVVALQQQMANT
EEEEECCCCHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TSGLTGTLIKNAMNINNDSVKSDSQKITEICGMSRSLITDKSSSVYTTINKKCMEIETSI
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCEEEHHHHHHHHHHHHH
IANVDDKQKLSSLINTIINISNSTANNSNSNTQKATDTALNDVVNAIKKIIPSQEFNRTI
HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCEE
TLNQGQNIKIYVNKDYLFPTKAVSGVKVL
EECCCCEEEEEEECCEECCHHHCCCCCCC
>Mature Secondary Structure
MQNINNDSNQDPQGQYDHSEDSKVVGPEVHNEFSKVASSAKRSVLLTIVIVVISIVILYF
CCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VISSIFIDESHKEESIAVPVPVDVIKPNIELSGDIVIPELPTIPTLITPELPEIKVPDQA
HHHHHHHCCCCCCCCEEECCCHHHCCCCCEECCCEECCCCCCCCCEECCCCCCCCCCCHH
KLNNLNNDNSSKDEVVQSNKLPKESKLIKPPVLPLTEQGEYNNAKQDAKIPSLDLSAQTK
HHCCCCCCCCCHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHH
DRAARLQEKRTSTNIVLINKSPPSPTREEMEQIRNFTDAGELRYLLGRGTVIDAVIISAV
HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHH
NSDFIGEIVAMVSKDVYSQEGKTVLIPRGSKIFGYPSVLDNAAYGRMMITWSEVQIAGSQ
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHHCCCCCCEEEEEEEEEEEECCE
YKLNLSAPTIDRLGKIGVTGKVNNKNLARIMHAVLVSAVNIGAAFTLDKVVALQQQMANT
EEEEECCCCHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TSGLTGTLIKNAMNINNDSVKSDSQKITEICGMSRSLITDKSSSVYTTINKKCMEIETSI
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCEEEHHHHHHHHHHHHH
IANVDDKQKLSSLINTIINISNSTANNSNSNTQKATDTALNDVVNAIKKIIPSQEFNRTI
HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCEE
TLNQGQNIKIYVNKDYLFPTKAVSGVKVL
EECCCCEEEEEEECCEECCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 3584073 [H]