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The map label for this gene is virB9 [H]

Identifier: 148284001

GI number: 148284001

Start: 3698

End: 4099

Strand: Direct

Name: virB9 [H]

Synonym: OTBS_0004

Alternate gene names: 148284001

Gene position: 3698-4099 (Clockwise)

Preceding gene: 148284000

Following gene: 148284002

Centisome position: 0.17

GC content: 29.35

Gene sequence:

>402_bases
TTGTTATTTTCCTCAGTAGTATATAGTAGTTATTTTGAGGAAGAATTTCCTACTACAGCTGATGATAGAATTAAAACTTA
CATATATAATCCTAGCGAAGTTTATCTATTAGTATTGCATGCTGGATTTCAATCAAGTATTGAGTTTGCTAAAAATGAGG
AGATTAGAAGTATTTTCTTTGGCGATAATTATGCTTGGGAAGTTACATATCCACTACCAAATAGAATATTTATTAAATCC
CTTGAAAAGAATGTGCGAACCAATATGACTATTATTACAAATAAGAGAACATATGAGTTTGATATTGTATCTAAGGAGCT
AGAAGTAGGGCGTGAACATGACTTAGTTTATTTAATTAGATTTTATTATCCACAAAAGAAAGCGTGCAATAAAGAAAAGT
AA

Upstream 100 bases:

>100_bases
GAACTTTCTCCTGAAGAATTTGATATTAATCCAGTAGGTTTTCAAATTATAGGATATAGAATAGATGATGATTATAGTTA
GAATATTTCTTATTTTAAAT

Downstream 100 bases:

>100_bases
TGCAAAATATTAATAACGATTCTAATCAAGATCCACAGGGCCAATATGATCATTCTGAGGATTCTAAAGTAGTTGGACCA
GAAGTACATAATGAATTTTC

Product: type IV secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MLFSSVVYSSYFEEEFPTTADDRIKTYIYNPSEVYLLVLHAGFQSSIEFAKNEEIRSIFFGDNYAWEVTYPLPNRIFIKS
LEKNVRTNMTIITNKRTYEFDIVSKELEVGREHDLVYLIRFYYPQKKACNKEK

Sequences:

>Translated_133_residues
MLFSSVVYSSYFEEEFPTTADDRIKTYIYNPSEVYLLVLHAGFQSSIEFAKNEEIRSIFFGDNYAWEVTYPLPNRIFIKS
LEKNVRTNMTIITNKRTYEFDIVSKELEVGREHDLVYLIRFYYPQKKACNKEK
>Mature_133_residues
MLFSSVVYSSYFEEEFPTTADDRIKTYIYNPSEVYLLVLHAGFQSSIEFAKNEEIRSIFFGDNYAWEVTYPLPNRIFIKS
LEKNVRTNMTIITNKRTYEFDIVSKELEVGREHDLVYLIRFYYPQKKACNKEK

Specific function: Component of the type IV secretion system virB/virD4 which could be a major virulence determinant for subversion of human endothelial cell (HEC) function [H]

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 15885; Mature: 15885

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFSSVVYSSYFEEEFPTTADDRIKTYIYNPSEVYLLVLHAGFQSSIEFAKNEEIRSIFF
CCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHHCCCCCEEEEEE
GDNYAWEVTYPLPNRIFIKSLEKNVRTNMTIITNKRTYEFDIVSKELEVGREHDLVYLIR
CCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCEEEEEEECHHHHCCCCCCEEEEEE
FYYPQKKACNKEK
EECCCCCCCCCCC
>Mature Secondary Structure
MLFSSVVYSSYFEEEFPTTADDRIKTYIYNPSEVYLLVLHAGFQSSIEFAKNEEIRSIFF
CCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHHCCCCCEEEEEE
GDNYAWEVTYPLPNRIFIKSLEKNVRTNMTIITNKRTYEFDIVSKELEVGREHDLVYLIR
CCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCEEEEEEECHHHHCCCCCCEEEEEE
FYYPQKKACNKEK
EECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA