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The map label for this gene is virB8

Identifier: 148284000

GI number: 148284000

Start: 2998

End: 3678

Strand: Direct

Name: virB8

Synonym: OTBS_0003

Alternate gene names: NA

Gene position: 2998-3678 (Clockwise)

Preceding gene: 148283999

Following gene: 148284001

Centisome position: 0.14

GC content: 28.78

Gene sequence:

>681_bases
ATGTTTTTTTGGAAAAATAAAAAGAAAGTTGAACAGCAAAAGCAAAATAAGCCTGCTATAAAAAGTTGGTTTAATGATCA
TTATGAAACTGTTTTGGTACAGCGTAACATTGCTGTATTGTTATCATTTATATGTATAATATTAATTTTTATAGCAGTAG
TTGCTGTGATGAAAATATCTTTAGCAAGAAATTTTGAACCATTTGTAATACAGATTGAAGAAAAAACTGGGGCAACCAGG
GTTGTTAATCCAGTTGGAATTGAAGTATTAAATACTGAAAAAGCGTTAGCGCAATATTTTATTAAGTTATATATTTCTGC
TAGGGAAACATATAATCCAGTAGATTTTGAGATTAAAGCTAGACAAACTATTAAATTATTGTCTAATAACAATGTTTATT
GGTCATATTTGAATTTTATTAATCGAAAGGAAAATGATCCAAGGTTAATATATGGGCAACGTGAAACTACAACATTAAAG
GTTAGATCATGGTCAGAGTTGCCTGACAGAAGGTTTATTGTTCGAATTGCAATACATGAATCTATAAGCGGAAAGGTATT
TAATAAGATTGTTGTAGTACAGTATCAATATGTTCCTATGGAACTTTCTCCTGAAGAATTTGATATTAATCCAGTAGGTT
TTCAAATTATAGGATATAGAATAGATGATGATTATAGTTAG

Upstream 100 bases:

>100_bases
GATAACAATTTATTAGTAATTAAAAAGTAATGTTACACTTAACATAATTATAAAAAAGCTTACTATAAAAATAAATAGTA
ATATACTTATTAATATTGAA

Downstream 100 bases:

>100_bases
AATATTTCTTATTTTAAATTTGTTATTTTCCTCAGTAGTATATAGTAGTTATTTTGAGGAAGAATTTCCTACTACAGCTG
ATGATAGAATTAAAACTTAC

Product: type IV secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MFFWKNKKKVEQQKQNKPAIKSWFNDHYETVLVQRNIAVLLSFICIILIFIAVVAVMKISLARNFEPFVIQIEEKTGATR
VVNPVGIEVLNTEKALAQYFIKLYISARETYNPVDFEIKARQTIKLLSNNNVYWSYLNFINRKENDPRLIYGQRETTTLK
VRSWSELPDRRFIVRIAIHESISGKVFNKIVVVQYQYVPMELSPEEFDINPVGFQIIGYRIDDDYS

Sequences:

>Translated_226_residues
MFFWKNKKKVEQQKQNKPAIKSWFNDHYETVLVQRNIAVLLSFICIILIFIAVVAVMKISLARNFEPFVIQIEEKTGATR
VVNPVGIEVLNTEKALAQYFIKLYISARETYNPVDFEIKARQTIKLLSNNNVYWSYLNFINRKENDPRLIYGQRETTTLK
VRSWSELPDRRFIVRIAIHESISGKVFNKIVVVQYQYVPMELSPEEFDINPVGFQIIGYRIDDDYS
>Mature_226_residues
MFFWKNKKKVEQQKQNKPAIKSWFNDHYETVLVQRNIAVLLSFICIILIFIAVVAVMKISLARNFEPFVIQIEEKTGATR
VVNPVGIEVLNTEKALAQYFIKLYISARETYNPVDFEIKARQTIKLLSNNNVYWSYLNFINRKENDPRLIYGQRETTTLK
VRSWSELPDRRFIVRIAIHESISGKVFNKIVVVQYQYVPMELSPEEFDINPVGFQIIGYRIDDDYS

Specific function: Unknown

COG id: COG3736

COG function: function code U; Type IV secretory pathway, component VirB8

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 26594; Mature: 26594

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFWKNKKKVEQQKQNKPAIKSWFNDHYETVLVQRNIAVLLSFICIILIFIAVVAVMKIS
CCEECCHHHHHHHHCCCCHHHHHHCCHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
LARNFEPFVIQIEEKTGATRVVNPVGIEVLNTEKALAQYFIKLYISARETYNPVDFEIKA
HHCCCCCEEEEEECCCCCEEEECCCCEEEECHHHHHHHHHHHHHEECCCCCCCCCEEEEC
RQTIKLLSNNNVYWSYLNFINRKENDPRLIYGQRETTTLKVRSWSELPDRRFIVRIAIHE
CEEEEEEECCCEEEEEHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEEEEEC
SISGKVFNKIVVVQYQYVPMELSPEEFDINPVGFQIIGYRIDDDYS
CCCCCEEEEEEEEEEEEECCEECCCCCCCCCCCEEEEEEEECCCCC
>Mature Secondary Structure
MFFWKNKKKVEQQKQNKPAIKSWFNDHYETVLVQRNIAVLLSFICIILIFIAVVAVMKIS
CCEECCHHHHHHHHCCCCHHHHHHCCHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
LARNFEPFVIQIEEKTGATRVVNPVGIEVLNTEKALAQYFIKLYISARETYNPVDFEIKA
HHCCCCCEEEEEECCCCCEEEECCCCEEEECHHHHHHHHHHHHHEECCCCCCCCCEEEEC
RQTIKLLSNNNVYWSYLNFINRKENDPRLIYGQRETTTLKVRSWSELPDRRFIVRIAIHE
CEEEEEEECCCEEEEEHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEEEEEC
SISGKVFNKIVVVQYQYVPMELSPEEFDINPVGFQIIGYRIDDDYS
CCCCCEEEEEEEEEEEEECCEECCCCCCCCCCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]