Click here to switch to the map view.

The map label for this gene is crtN

Identifier: 148268993

GI number: 148268993

Start: 2736862

End: 2738370

Strand: Reverse

Name: crtN

Synonym: SaurJH9_2583

Alternate gene names: 148268993

Gene position: 2738370-2736862 (Counterclockwise)

Preceding gene: 148268994

Following gene: 148268992

Centisome position: 94.21

GC content: 35.32

Gene sequence:

>1509_bases
ATGAAGATTGCAGTAATTGGTGCAGGTGTCACAGGATTAGCAGCGGCAGCCCGTATTGCTTCTCAAGGTCATGAAGTGAC
GATATTTGAAAAAAATAATAATGTAGGCGGGCGTATGAATCAATTAAAGAAAGACGGCTTTACATTTGATATGGGTCCCA
CAATTGTCATGATGCCAGATGTTTATAAAGATGTTTTTACAGCGTGTGGTAAAAATTATGAAGATTATATTGAATTGAGA
CAATTACGTTATATTTACGATGTGTATTTTGACCACGATGATCGTATAACGGTGCCTACAGATTTAGCTGAATTACAGCA
AATGCTAGAAAGTATAGAACCTGGTTCAACGCATGGTTTTATGTCCTTTTTAACGGATGTTTATAAAAAATATGAAATTG
CACGTCGCTATTTCTTAGAAAGAACGTATCGCAAACCGAGTGACTTTTATAATATGACGTCACTTGTGCAAGGTGCTAAG
TTAAAAACGTTAAATCATGCAGATCAGCTAATTGAACATTATATTGATAACGAAAAGATACAAAAGCTTTTAGCGTTTCA
AACGTTATACATAGGAATTGATCCAAAACGAGGCCCGTCACTATATTCAATTATTCCTATGATTGAAATGATGTTTGGTG
TGCATTTTATTAAAGGCGGTATGTATGGTATGGCTCAAGGGCTAGCGCAATTAAATAAAGACTTAGGCGTTAATATTGAA
CTAAATGCTGAAATTGAGCAAATTATTATTGATCCTAAATTCAAACGGGCCGATGCGATAAAAGTGAATGGTGACATAAG
AAAATTTGATAAAATTTTATGTACGGCTGATTTCCCTAGTGTTGCGGAATCATTAATGCCAGATTTTGCACCTATTAAAA
AGTATCCACCACATAAAATTGCAGACTTAGATTACTCTTGTTCAGCATTTTTAATGTATATCGGTATAGATATTGATGTG
ACAGATCAAGTGAGACTTCATAATGTTATTTTTTCAGATGACTTTAGAGGCAATATTGAAGAAATATTTGAGGGACGTTT
ATCATATGATCCTTCTATTTATGTGTATGTACCAGCGGTCGCTGATAAATCACTTGCGCCAGAAGGCAAAACTGGTATTT
ATGTGCTAATGCCGACGCCGGAACTTAAAACAGGTAGCGGAATCGATTGGTCAGATGAAGCTTTGACGCAACAAATAAAG
GAAATTATTTATCGTAAATTAGCAACAATTGAAGTATTTGAAGATATAAAATCGCATATTGTTTCAGAAACAATCTTTAC
GCCAAATGATTTTGAGCAAACGTATCATGCGAAATTTGGTTCGGCATTCGGTTTAATGCCAACTTTAGCGCAAAGTAATT
ATTATCGTCCACAAAATGTATCGCGAGATTATAAAGATTTATATTTTGCAGGTGCAAGTACGCACCCAGGTGCAGGCGTT
CCTATTGTCTTAACAAGTGCGAAAATAACTGTAGACGAAATGATTAAAGATATTGAGCGGGGCGTATAA

Upstream 100 bases:

>100_bases
ACTATACATTACATGAACGTGTTTTTGTGGATAAGCGGAAAAAGGCAAAGTTGTTTCATGAAATAAATAGTAAATATCAT
AGAATATAGGTGGTTGAATA

Downstream 100 bases:

>100_bases
GGGAGTAGTCTAAGAGAAAGATGTGAGAAAAGTATAAGGGGAAAGTAAAAGGCATAGTGAAATAAGTATGTTCTAAAGAA
GTTTTATTTAACAATGAATA

Product: squalene synthase

Products: NA

Alternate protein names: 4,4'-diapophytoene desaturase; Diapophytoene desaturase

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPDVYKDVFTACGKNYEDYIELR
QLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGFMSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAK
LKTLNHADQLIEHYIDNEKIQKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKIADLDYSCSAFLMYIGIDIDV
TDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAVADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIK
EIIYRKLATIEVFEDIKSHIVSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
PIVLTSAKITVDEMIKDIERGV

Sequences:

>Translated_502_residues
MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPDVYKDVFTACGKNYEDYIELR
QLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGFMSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAK
LKTLNHADQLIEHYIDNEKIQKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKIADLDYSCSAFLMYIGIDIDV
TDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAVADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIK
EIIYRKLATIEVFEDIKSHIVSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
PIVLTSAKITVDEMIKDIERGV
>Mature_502_residues
MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPDVYKDVFTACGKNYEDYIELR
QLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGFMSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAK
LKTLNHADQLIEHYIDNEKIQKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKIADLDYSCSAFLMYIGIDIDV
TDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAVADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIK
EIIYRKLATIEVFEDIKSHIVSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
PIVLTSAKITVDEMIKDIERGV

Specific function: Catalyzes three successive dehydrogenation reactions that lead to the introduction of three double bonds into dehydrosqualene (4,4'-diapophytoene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'- diaponeurosporene (the

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family. CrtN subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CRTN_STAA3 (Q2FDU6)

Other databases:

- EMBL:   CP000255
- RefSeq:   YP_495132.1
- ProteinModelPortal:   Q2FDU6
- STRING:   Q2FDU6
- EnsemblBacteria:   EBSTAT00000037747
- GeneID:   3912838
- GenomeReviews:   CP000255_GR
- KEGG:   saa:SAUSA300_2498
- eggNOG:   COG1233
- GeneTree:   EBGT00050000023975
- HOGENOM:   HBG735114
- OMA:   LKAGIDW
- ProtClustDB:   CLSK886071
- GO:   GO:0015979
- InterPro:   IPR002937
- InterPro:   IPR014105
- TIGRFAMs:   TIGR02734

Pfam domain/function: PF01593 Amino_oxidase

EC number: NA

Molecular weight: Translated: 56743; Mature: 56743

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS00982 PHYTOENE_DH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPD
CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCEEECCCEEEECCH
VYKDVFTACGKNYEDYIELRQLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGF
HHHHHHHHHCCCHHHHHHHHHHHHHHHEEECCCCCEECCCCHHHHHHHHHHCCCCCCHHH
MSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAKLKTLNHADQLIEHYIDNEKI
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHH
QKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
HHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEE
LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKI
ECCCEEEEEECCCCCCCCEEEECCCHHHHHHHEEECCCHHHHHHHCCCCCCCCCCCCCCC
ADLDYSCSAFLMYIGIDIDVTDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAV
CCCCCCHHEEEEEEECEECCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCCEEEEEEECC
ADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIKEIIYRKLATIEVFEDIKSHI
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
HHHHCCCCCHHHHHHHHHHCCHHCCCHHHHCCCCCCCCCCCCCHHHHEEECCCCCCCCCC
PIVLTSAKITVDEMIKDIERGV
EEEEEECCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPD
CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCEEECCCEEEECCH
VYKDVFTACGKNYEDYIELRQLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGF
HHHHHHHHHCCCHHHHHHHHHHHHHHHEEECCCCCEECCCCHHHHHHHHHHCCCCCCHHH
MSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAKLKTLNHADQLIEHYIDNEKI
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHH
QKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
HHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEE
LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKI
ECCCEEEEEECCCCCCCCEEEECCCHHHHHHHEEECCCHHHHHHHCCCCCCCCCCCCCCC
ADLDYSCSAFLMYIGIDIDVTDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAV
CCCCCCHHEEEEEEECEECCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCCEEEEEEECC
ADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIKEIIYRKLATIEVFEDIKSHI
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
HHHHCCCCCHHHHHHHHHHCCHHCCCHHHHCCCCCCCCCCCCCHHHHEEECCCCCCCCCC
PIVLTSAKITVDEMIKDIERGV
EEEEEECCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA