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The map label for this gene is ywbI [H]

Identifier: 148268975

GI number: 148268975

Start: 2713780

End: 2714658

Strand: Reverse

Name: ywbI [H]

Synonym: SaurJH9_2565

Alternate gene names: 148268975

Gene position: 2714658-2713780 (Counterclockwise)

Preceding gene: 148268978

Following gene: 148268974

Centisome position: 93.39

GC content: 33.9

Gene sequence:

>879_bases
GTGGATATCAAACATATGAAATATTTTATTGAAGTCGTTAAGCAAGGAGGCATGACTAATGCCTCCAAATCATTATATAT
TGCACAACCTACAATTAGTAAAGCAATTAAAGATATTGAAAATGAAATGGGCACGCCCTTATTTGATAGAAGTAAAAGAC
ATTTAATACTTACCGATGCAGGTCAAATTTTTTATGAGAAAAGTAAAGAAATTGTTGCACTGTATGATTATTTACCATCT
GAAATGGAACGCTTGAATGGACTGGAAACAGGGCATATAAACATGGGCATGTCGGCAGTCATGAATATGAAGATTCTTAT
CAATATTCTTGGTGCATTCCATCAGCAATATCCAAATGTTACATATAATTTAATAGAAAATGGCGGCAAAACGATTGAGC
AGCAAATTATCAATGATGAAGTAGATATAGGCGTGACCACTTTGCCAGTCGATCATCATATTTTCGATTATACTACCCTA
GATAAGGAAGATTTGCGACTTATCGTGAGCAGAGAGCATCGACTCGCAAAATATGAAACTGTTAAACTCGAAGATTTAGC
AGGTGAAGACTTCATTTTATTTAATAAAGACTTTTACTTGAATGATAAAATTATTGAAAATGCTAAAAACGTTGGCTTTG
TTCCGAATACTGTAGCGCAAATTTCACAATGGCATGTTATAGAAGATTTAGTTACGAATGAATTAGGTATTAGTATTTTA
CCAACATCAATTTCAGAGCAACTAAATGGAGATGTGAAGCTGCTACGCATTGAAGATGCGCATGTACATTGGGAATTAGG
TGTTGTTTGGAAGAAGGATAAACAATTAAGTCATGCCACAACGAAATGGATAGAATTTTTGAAAGATCGTTTAGGCTAA

Upstream 100 bases:

>100_bases
AAAACTTTTTATAAAGCAATTTTATAAATCTAAATTTATTGAATGTTTAAGAAGTTGTGTATAATGAAATAAACGTGTTG
AAATAGTTAGGATGATGTTA

Downstream 100 bases:

>100_bases
CATATTAATAAAGCACTCATTATTTAAGGCGCATCATTACGTGGGTCATTGAAATGATGAGTGTTTTTTTGTGAAAATGA
AGTGAAATTGAGAGAGCGTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDAGQIFYEKSKEIVALYDYLPS
EMERLNGLETGHINMGMSAVMNMKILINILGAFHQQYPNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTL
DKEDLRLIVSREHRLAKYETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGISIL
PTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG

Sequences:

>Translated_292_residues
MDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDAGQIFYEKSKEIVALYDYLPS
EMERLNGLETGHINMGMSAVMNMKILINILGAFHQQYPNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTL
DKEDLRLIVSREHRLAKYETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGISIL
PTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
>Mature_292_residues
MDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDAGQIFYEKSKEIVALYDYLPS
EMERLNGLETGHINMGMSAVMNMKILINILGAFHQQYPNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTL
DKEDLRLIVSREHRLAKYETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGISIL
PTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=247, Percent_Identity=27.1255060728745, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787879, Length=290, Percent_Identity=27.2413793103448, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=23.6933797909408, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI2367136, Length=287, Percent_Identity=24.390243902439, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788887, Length=299, Percent_Identity=25.0836120401338, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790399, Length=294, Percent_Identity=22.108843537415, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788297, Length=253, Percent_Identity=23.3201581027668, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787601, Length=183, Percent_Identity=27.3224043715847, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=21.9931271477663, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787530, Length=287, Percent_Identity=23.6933797909408, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1789506, Length=289, Percent_Identity=20.0692041522491, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=23.7113402061856, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI87081904, Length=175, Percent_Identity=26.2857142857143, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787806, Length=251, Percent_Identity=20.7171314741036, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789204, Length=199, Percent_Identity=24.6231155778894, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789639, Length=123, Percent_Identity=26.8292682926829, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=243, Percent_Identity=20.5761316872428, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786401, Length=307, Percent_Identity=20.8469055374593, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786713, Length=182, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788296, Length=278, Percent_Identity=23.021582733813, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33472; Mature: 33472

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDA
CCHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
GQIFYEKSKEIVALYDYLPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQYPNV
CHHHHHCCCCEEEHHHHCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
TYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAKYET
EEEEHHCCCHHHHHHHCCCCCCCCEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHEE
VKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGISIL
EEEHHCCCCEEEEECCCEEECHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
PTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
CCHHHHHCCCCEEEEEEECCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDA
CCHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
GQIFYEKSKEIVALYDYLPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQYPNV
CHHHHHCCCCEEEHHHHCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
TYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAKYET
EEEEHHCCCHHHHHHHCCCCCCCCEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHEE
VKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGISIL
EEEHHCCCCEEEEECCCEEECHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
PTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
CCHHHHHCCCCEEEEEEECCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]