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The map label for this gene is sigS [H]

Identifier: 148268252

GI number: 148268252

Start: 1957114

End: 1957662

Strand: Direct

Name: sigS [H]

Synonym: SaurJH9_1829

Alternate gene names: 148268252

Gene position: 1957114-1957662 (Clockwise)

Preceding gene: 148268249

Following gene: 148268253

Centisome position: 67.33

GC content: 27.5

Gene sequence:

>549_bases
ATGAATGATTTTTCTAAATATTTTATTCTAACTTTATCCGGAAATATTTGTTATACGTATAACTTGGAGAATGACTACTT
GAAATTTAATGACGTATACAACAAACACCACAAAATCATACACCATCTTTTAAAAAAATATAATATTAGCTATAATTATG
ATGAGTATTATCAACTACTCTTGATAAAAATGTGGCAATTGAGTCAGATATATAAACCCTCAAGCAAGCAATCTTTATCC
TCTTTTTTATTCACTCGATTAAATTATTACCTTATCGATTTATTCAGACAACAAAATCAATTAAAAGATGTCATTTTATG
TGAGAATAATTCACCAACATTAACTGAACAACCAACATACTTTAATGAACATGACCTTCGTTTACAAGATATCTTCAAGC
TTTTAAATCATAGAGAAAGACTATGGCTCAAACTATACCTTGAAGGATACAAGCAATTTGAAATTGCTGAAATCATGTCA
TTATCGCTTTCAACGATTAAATTAATTAAGATGTCCGTTAAGCGTAAATGCCAACATAATTTTAATTAG

Upstream 100 bases:

>100_bases
TTTTGTTCTATCTACTATTTAGCAAAGTAATAATACATCATATCACATTAAATTAATTACTTATGTCTTATATTTAACAC
TTAATTTAGCGATTACGCAA

Downstream 100 bases:

>100_bases
TTTATTGTGAAATTTCGGTCGATGTGTTAGTGATGTTGAAACACCCTAACATCTTCATATAAATTTATTTTAACCATTAA
ATTAACAACTTATTATACGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MNDFSKYFILTLSGNICYTYNLENDYLKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLLLIKMWQLSQIYKPSSKQSLS
SFLFTRLNYYLIDLFRQQNQLKDVILCENNSPTLTEQPTYFNEHDLRLQDIFKLLNHRERLWLKLYLEGYKQFEIAEIMS
LSLSTIKLIKMSVKRKCQHNFN

Sequences:

>Translated_182_residues
MNDFSKYFILTLSGNICYTYNLENDYLKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLLLIKMWQLSQIYKPSSKQSLS
SFLFTRLNYYLIDLFRQQNQLKDVILCENNSPTLTEQPTYFNEHDLRLQDIFKLLNHRERLWLKLYLEGYKQFEIAEIMS
LSLSTIKLIKMSVKRKCQHNFN
>Mature_182_residues
MNDFSKYFILTLSGNICYTYNLENDYLKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLLLIKMWQLSQIYKPSSKQSLS
SFLFTRLNYYLIDLFRQQNQLKDVILCENNSPTLTEQPTYFNEHDLRLQDIFKLLNHRERLWLKLYLEGYKQFEIAEIMS
LSLSTIKLIKMSVKRKCQHNFN

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-S contributes to the protection against external stress, thus playing a role in cellular fitness and survival [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 22268; Mature: 22268

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDFSKYFILTLSGNICYTYNLENDYLKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLL
CCCCCEEEEEEEECCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LIKMWQLSQIYKPSSKQSLSSFLFTRLNYYLIDLFRQQNQLKDVILCENNSPTLTEQPTY
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
FNEHDLRLQDIFKLLNHRERLWLKLYLEGYKQFEIAEIMSLSLSTIKLIKMSVKRKCQHN
CCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FN
CC
>Mature Secondary Structure
MNDFSKYFILTLSGNICYTYNLENDYLKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLL
CCCCCEEEEEEEECCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LIKMWQLSQIYKPSSKQSLSSFLFTRLNYYLIDLFRQQNQLKDVILCENNSPTLTEQPTY
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
FNEHDLRLQDIFKLLNHRERLWLKLYLEGYKQFEIAEIMSLSLSTIKLIKMSVKRKCQHN
CCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FN
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA