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The map label for this gene is yoqD [H]

Identifier: 148267461

GI number: 148267461

Start: 1080421

End: 1081197

Strand: Direct

Name: yoqD [H]

Synonym: SaurJH9_1027

Alternate gene names: 148267461

Gene position: 1080421-1081197 (Clockwise)

Preceding gene: 148267460

Following gene: 148267462

Centisome position: 37.17

GC content: 35.26

Gene sequence:

>777_bases
ATGCAAGCATTACAAATAGTAGAACAGAACGAAACACATTATGTAGACAGTAGAGAAGTTGCGGAAATGATAGGAAAGCG
ACACGACAATTTAGTAAGAGACATTAAAGGTTATATCAAGGTTTTAGAGGACTCCTCAAAATTGAGTAGTCATAATTTCT
TTGAAGAAAGCACCTATGTTAATTCACAAAACAAAGTACAACCTTGTTACCTACTAACCAAAAAAGGTTGCGACATAGTA
GCAAACAAGATGACAGGTAGTAAAGGCATTTTGTTTACTGCAACTTATGTTGATGCATTTCATAAAATGGATGAATACAT
TAAACAACAAGCACAGCTTAATGTACCACAAACACCAATGCAAGCATTAGAGATGATGTTCAAAGCACAAAAAGACCAAG
AACAGTTTAACAAACAAATGCAACAAGAAATCACAGGCATTCGTCACATTGTCGGTATTGAAACGAAAAACTGGCGTAAC
GACACAAACAAAATGTTATCTGCGATTGCACAACATTTAGGTGGCGGAGCAATGCACCAGAAAGTTAAGTCTGAAGCATA
TAAAGCTTTAGAAGAAAAAGGACGCTGTAATTTAAAAATTCGTATGCAGAACCGCAAAGGCAAAATGCTAGCGAATGGTG
CAACGAAAACCCAGATTAACAAGTTGTCAAAATTAGATGTGATTACTGATGAACCTAGATTGGTTGAGATATACATTTCA
GTGATTAAGAGTATGGCGATTAAATACGGTGTAGATATTAGCCAATTTGAAATTTAA

Upstream 100 bases:

>100_bases
ATTTATTTTGCGTTAGAATTGACACCTCAAGAAGGAAGAGATATTTTTTTTAACGAAGACTTACGCAAAAAGAAAGTTTT
AACTTAAGGAGGAAACTGAA

Downstream 100 bases:

>100_bases
ACAAACATCTTAAAAGGAGGAACAACAAATGTTACAAAAATTTAGAATCGCTAAAGAAAAAAGTAAATTAAAACTCAATT
TACTAAAACATGCAAACAGT

Product: Rha family phage regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MQALQIVEQNETHYVDSREVAEMIGKRHDNLVRDIKGYIKVLEDSSKLSSHNFFEESTYVNSQNKVQPCYLLTKKGCDIV
ANKMTGSKGILFTATYVDAFHKMDEYIKQQAQLNVPQTPMQALEMMFKAQKDQEQFNKQMQQEITGIRHIVGIETKNWRN
DTNKMLSAIAQHLGGGAMHQKVKSEAYKALEEKGRCNLKIRMQNRKGKMLANGATKTQINKLSKLDVITDEPRLVEIYIS
VIKSMAIKYGVDISQFEI

Sequences:

>Translated_258_residues
MQALQIVEQNETHYVDSREVAEMIGKRHDNLVRDIKGYIKVLEDSSKLSSHNFFEESTYVNSQNKVQPCYLLTKKGCDIV
ANKMTGSKGILFTATYVDAFHKMDEYIKQQAQLNVPQTPMQALEMMFKAQKDQEQFNKQMQQEITGIRHIVGIETKNWRN
DTNKMLSAIAQHLGGGAMHQKVKSEAYKALEEKGRCNLKIRMQNRKGKMLANGATKTQINKLSKLDVITDEPRLVEIYIS
VIKSMAIKYGVDISQFEI
>Mature_258_residues
MQALQIVEQNETHYVDSREVAEMIGKRHDNLVRDIKGYIKVLEDSSKLSSHNFFEESTYVNSQNKVQPCYLLTKKGCDIV
ANKMTGSKGILFTATYVDAFHKMDEYIKQQAQLNVPQTPMQALEMMFKAQKDQEQFNKQMQQEITGIRHIVGIETKNWRN
DTNKMLSAIAQHLGGGAMHQKVKSEAYKALEEKGRCNLKIRMQNRKGKMLANGATKTQINKLSKLDVITDEPRLVEIYIS
VIKSMAIKYGVDISQFEI

Specific function: Unknown

COG id: COG3646

COG function: function code S; Uncharacterized phage-encoded protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005039
- InterPro:   IPR014054
- InterPro:   IPR019104 [H]

Pfam domain/function: PF03374 ANT; PF09669 Phage_pRha [H]

EC number: NA

Molecular weight: Translated: 29525; Mature: 29525

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALQIVEQNETHYVDSREVAEMIGKRHDNLVRDIKGYIKVLEDSSKLSSHNFFEESTYV
CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHEE
NSQNKVQPCYLLTKKGCDIVANKMTGSKGILFTATYVDAFHKMDEYIKQQAQLNVPQTPM
CCCCCCCHHEEEECCCCHHEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHH
QALEMMFKAQKDQEQFNKQMQQEITGIRHIVGIETKNWRNDTNKMLSAIAQHLGGGAMHQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
KVKSEAYKALEEKGRCNLKIRMQNRKGKMLANGATKTQINKLSKLDVITDEPRLVEIYIS
HHHHHHHHHHHHCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHCCEECCCCHHHHHHHH
VIKSMAIKYGVDISQFEI
HHHHHHHHHCCCHHHHCC
>Mature Secondary Structure
MQALQIVEQNETHYVDSREVAEMIGKRHDNLVRDIKGYIKVLEDSSKLSSHNFFEESTYV
CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHEE
NSQNKVQPCYLLTKKGCDIVANKMTGSKGILFTATYVDAFHKMDEYIKQQAQLNVPQTPM
CCCCCCCHHEEEECCCCHHEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHH
QALEMMFKAQKDQEQFNKQMQQEITGIRHIVGIETKNWRNDTNKMLSAIAQHLGGGAMHQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
KVKSEAYKALEEKGRCNLKIRMQNRKGKMLANGATKTQINKLSKLDVITDEPRLVEIYIS
HHHHHHHHHHHHCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHCCEECCCCHHHHHHHH
VIKSMAIKYGVDISQFEI
HHHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]