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The map label for this gene is ps201 [H]

Identifier: 148267454

GI number: 148267454

Start: 1076311

End: 1077516

Strand: Reverse

Name: ps201 [H]

Synonym: SaurJH9_1020

Alternate gene names: 148267454

Gene position: 1077516-1076311 (Counterclockwise)

Preceding gene: 148267456

Following gene: 148267449

Centisome position: 37.07

GC content: 29.6

Gene sequence:

>1206_bases
ATGTGGATTGAAAAATTTAAAAACAAAAATAACGAAACTAAATACAGATATTACGAGAAGTACAAAGATCCATACACAGA
TAAATGGAAACGTGTAAGTGTTGTCTTGAACAAAGATACAAAACAATCACAAAAAGAAGCTATGTTCCGTTTAGAAGAAA
AAATAAAAGAAAAACTAAACAACAAGTCGTCAAGCGAATTAAAAACTTTGACTTTTCACACTCTATTAGAGGAATGGCTT
GAATATCATATAAAAACGTCAGGTTCAAAGGTGACTACTCTTAATAATATCAAAACGAGGGTCAAAAATATAAAAAAGAA
CAGTTCTAAAGACTTACTTTTAAACAAGCTTGATACAAAATACATGCAAATGTTTATTAATAAGTTGTCAAGCATCTATT
CTACAAATCAATTAAGGTACCAACTTGGACACATGAAAGAAGCCATTAAATACGCAGTTAAATTCTACGATTACCCAAAT
GAACATCTACTAACCGGTGTCAAACTTCCAAAGAAAAGAAAAACGATTGAAGATATTGAAAAAGACGAAGCTAAAATGTA
CAACTATCTTGAATTACAACAAGTCATTCAAATACGCGATTTTATATTGAATTATAACAGTTTGCATTACAGAACTCGTA
TTTTAATTGCTGGTGCTCTAGAAGTACAAGCTTTAACGGGAATGCGTATAGGCGAGTTATTAGCACTTCAAATTAAAGAT
GTTGACCTAAAAAATAAAACAATTGATATTAACGGAACTCTTCATAGAATTAAATGTAATACTGGGTTTGGATATAAGGA
TACTACAAAAACTACAGGTTCAAAAAGAAACATTACCATCAATTCCAGAACAGCAAAGGTTTTAAAAAAGATAATGTTAG
AAAATAAAAAGATGAAACAATGGAAACCAAGTTATATTGATAGAGGATTCTTATTCACAACTAGTAAAGGAAATCCTTTA
CAAATTGATAAAATAAACAAACTATTATCTTTAGCTGCAGAATCATTGAATATAAATAAAAAGGTCACTACCCATACTTT
AAGACACACGCATATAAGTTTATTGGTGGAAATGAATATATCGTTAAAAGCAATTATGAAAAGGGTTGGGCATACCGATG
AAAAAACGACCATAAAAGTATACACCCATGTAACGGAGAAAATGGATAGAGAATTAGATCGAAAATTAGAAAAGCTTATA
TACTAA

Upstream 100 bases:

>100_bases
ATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGCCCACCTACCCTTATTATTTTTTACAAATTTACAGAACGTACG
TTCCTACAGGAGGTATAAAC

Downstream 100 bases:

>100_bases
AATCCATCTGCCCTTTTTATGCCCTTTTTTACCTTACAATACATTCTGAATACCTTGAAAACACTGTAATTAAGGCGTTA
TCTGTATCATTATGACACAT

Product: phage integrase family protein

Products: NA

Alternate protein names: Int-TnX [H]

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKDTKQSQKEAMFRLEEKIKEKLNNKSSSELKTLTFHTLLEEWL
EYHIKTSGSKVTTLNNIKTRVKNIKKNSSKDLLLNKLDTKYMQMFINKLSSIYSTNQLRYQLGHMKEAIKYAVKFYDYPN
EHLLTGVKLPKKRKTIEDIEKDEAKMYNYLELQQVIQIRDFILNYNSLHYRTRILIAGALEVQALTGMRIGELLALQIKD
VDLKNKTIDINGTLHRIKCNTGFGYKDTTKTTGSKRNITINSRTAKVLKKIMLENKKMKQWKPSYIDRGFLFTTSKGNPL
QIDKINKLLSLAAESLNINKKVTTHTLRHTHISLLVEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELDRKLEKLI
Y

Sequences:

>Translated_401_residues
MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKDTKQSQKEAMFRLEEKIKEKLNNKSSSELKTLTFHTLLEEWL
EYHIKTSGSKVTTLNNIKTRVKNIKKNSSKDLLLNKLDTKYMQMFINKLSSIYSTNQLRYQLGHMKEAIKYAVKFYDYPN
EHLLTGVKLPKKRKTIEDIEKDEAKMYNYLELQQVIQIRDFILNYNSLHYRTRILIAGALEVQALTGMRIGELLALQIKD
VDLKNKTIDINGTLHRIKCNTGFGYKDTTKTTGSKRNITINSRTAKVLKKIMLENKKMKQWKPSYIDRGFLFTTSKGNPL
QIDKINKLLSLAAESLNINKKVTTHTLRHTHISLLVEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELDRKLEKLI
Y
>Mature_401_residues
MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKDTKQSQKEAMFRLEEKIKEKLNNKSSSELKTLTFHTLLEEWL
EYHIKTSGSKVTTLNNIKTRVKNIKKNSSKDLLLNKLDTKYMQMFINKLSSIYSTNQLRYQLGHMKEAIKYAVKFYDYPN
EHLLTGVKLPKKRKTIEDIEKDEAKMYNYLELQQVIQIRDFILNYNSLHYRTRILIAGALEVQALTGMRIGELLALQIKD
VDLKNKTIDINGTLHRIKCNTGFGYKDTTKTTGSKRNITINSRTAKVLKKIMLENKKMKQWKPSYIDRGFLFTTSKGNPL
QIDKINKLLSLAAESLNINKKVTTHTLRHTHISLLVEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELDRKLEKLI
Y

Specific function: Fimb Is One Of The 2 Regulatory Proteins Which Control The Phase Variation Of Type 1 Fimbriae In E. coli. These Proteins Mediate The Periodic Inversion Of A 300bp DNA Segment That Harbors The Promoter For The Fimbrial Structural Gene, Fima. Fimb Switches

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47290; Mature: 47290

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKDTKQSQKEAMFRLEEKIKEKLN
CCCHHHCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHC
NKSSSELKTLTFHTLLEEWLEYHIKTSGSKVTTLNNIKTRVKNIKKNSSKDLLLNKLDTK
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHH
YMQMFINKLSSIYSTNQLRYQLGHMKEAIKYAVKFYDYPNEHLLTGVKLPKKRKTIEDIE
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHH
KDEAKMYNYLELQQVIQIRDFILNYNSLHYRTRILIAGALEVQALTGMRIGELLALQIKD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECHHHHHHCCCCHHHEEEEEEEC
VDLKNKTIDINGTLHRIKCNTGFGYKDTTKTTGSKRNITINSRTAKVLKKIMLENKKMKQ
CCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCHHHH
WKPSYIDRGFLFTTSKGNPLQIDKINKLLSLAAESLNINKKVTTHTLRHTHISLLVEMNI
CCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEEEEEECC
SLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELDRKLEKLIY
HHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKDTKQSQKEAMFRLEEKIKEKLN
CCCHHHCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHC
NKSSSELKTLTFHTLLEEWLEYHIKTSGSKVTTLNNIKTRVKNIKKNSSKDLLLNKLDTK
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHH
YMQMFINKLSSIYSTNQLRYQLGHMKEAIKYAVKFYDYPNEHLLTGVKLPKKRKTIEDIE
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHH
KDEAKMYNYLELQQVIQIRDFILNYNSLHYRTRILIAGALEVQALTGMRIGELLALQIKD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECHHHHHHCCCCHHHEEEEEEEC
VDLKNKTIDINGTLHRIKCNTGFGYKDTTKTTGSKRNITINSRTAKVLKKIMLENKKMKQ
CCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCHHHH
WKPSYIDRGFLFTTSKGNPLQIDKINKLLSLAAESLNINKKVTTHTLRHTHISLLVEMNI
CCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEEEEEECC
SLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELDRKLEKLIY
HHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10532372; 11337471 [H]