Click here to switch to the map view.

The map label for this gene is yeaT [C]

Identifier: 148261035

GI number: 148261035

Start: 2242823

End: 2243755

Strand: Reverse

Name: yeaT [C]

Synonym: Acry_2043

Alternate gene names: 148261035

Gene position: 2243755-2242823 (Counterclockwise)

Preceding gene: 148261037

Following gene: 148261034

Centisome position: 66.2

GC content: 71.38

Gene sequence:

>933_bases
GTGGATTACCTGGGAGCCCTGCGCCTGTTCGGCCGCGCGGTCGAGCTTGGCAGTTTCTCGAAGGCGGCCGAGGCGCAGGG
GGCCAAGGTCTCGACCGTCTCGCGCGCCGTCGCCGCGCTCGAGGCGGATCTCGGCGTCGCCCTGTTCCACCGCTCGACCC
GCCGCCTGCACCTCACCGAGCCGGGCGAGCAGTTCTATGCCCAGGTGCAGGCCATCCTCCGCAATCTCGACGAGGCGCGC
GATTCGGTCGCGGCGATGCAGGCGCGGCCGCAGGGACTGCTGCGGCTCAACCTGCCCGGCGCCTTCGGCCGCCGCCATGT
CGTGCCCTTCATTCCCGACTTCCTGAAGCTCTATCCCGGCCTCAGGCTCGAACTCTCCTTCACCGACGTGCGGATGGACC
TGCTGGCCAGCGGCGCCGACCTCGCCATCCGCATCGGCCCGCTGATCGACTCGACGCTGATCGCCCGCAAGCTCGCCGGC
CACCGCCGCGTCGTCTGCGCGAGCCCGTCCTATCTCGCCGGCGCCCCGCCGCTCGCCGCGCCGCGCGACCTGCTGCGGCA
CAACGCGCTGATCTACACGCTGCAGCCGACCGACCGCTGGTTCTTCCGCCGCGGCACCGAGGCGGGCGAGCCGGAGGAGG
AGGTGCCGATCGCCGGCATCCTCCGCTCGGATGATTCCGAGGCGCTGCTCGACGCGGCACTCGCCGGCGTCGGCATCGCC
CTGCTGCCGGTCTGGCTGGTCGGCGAGGATATCGCGCGCGGCCGGCTGGTCCGCCTGCTGCCGGACTGGTTCTCGATGAT
CTCGACCCGGCCCGGCGGGATCTATGGCATCTATCCGCCGCATGCGCGGATTTCCCCCAAGGTGCGCGCCTTTCTCGATT
TCATCGAGACCAGGTTCGGCCGCCCGCCCTACTGGGATGCCGGCACCGGCTGA

Upstream 100 bases:

>100_bases
AGGGCGCGCGGCCCCGCCGCCCCTTGCGGCGCGGCGGCGTATGGTCGACATCAGGGCACCGGCGCCGCGTGCGGGCGCCG
CCCCTGCCGGAGGTCGGAAC

Downstream 100 bases:

>100_bases
ATGCCGCCCCCGTCAACCGCACAAAGGACAAAGCCCGCGATGATCGTCCGCGATCGTGCCGATACGCTGACCCTGCTGAC
CACCCTGCGCGGATCGATCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDYLGALRLFGRAVELGSFSKAAEAQGAKVSTVSRAVAALEADLGVALFHRSTRRLHLTEPGEQFYAQVQAILRNLDEAR
DSVAAMQARPQGLLRLNLPGAFGRRHVVPFIPDFLKLYPGLRLELSFTDVRMDLLASGADLAIRIGPLIDSTLIARKLAG
HRRVVCASPSYLAGAPPLAAPRDLLRHNALIYTLQPTDRWFFRRGTEAGEPEEEVPIAGILRSDDSEALLDAALAGVGIA
LLPVWLVGEDIARGRLVRLLPDWFSMISTRPGGIYGIYPPHARISPKVRAFLDFIETRFGRPPYWDAGTG

Sequences:

>Translated_310_residues
MDYLGALRLFGRAVELGSFSKAAEAQGAKVSTVSRAVAALEADLGVALFHRSTRRLHLTEPGEQFYAQVQAILRNLDEAR
DSVAAMQARPQGLLRLNLPGAFGRRHVVPFIPDFLKLYPGLRLELSFTDVRMDLLASGADLAIRIGPLIDSTLIARKLAG
HRRVVCASPSYLAGAPPLAAPRDLLRHNALIYTLQPTDRWFFRRGTEAGEPEEEVPIAGILRSDDSEALLDAALAGVGIA
LLPVWLVGEDIARGRLVRLLPDWFSMISTRPGGIYGIYPPHARISPKVRAFLDFIETRFGRPPYWDAGTG
>Mature_310_residues
MDYLGALRLFGRAVELGSFSKAAEAQGAKVSTVSRAVAALEADLGVALFHRSTRRLHLTEPGEQFYAQVQAILRNLDEAR
DSVAAMQARPQGLLRLNLPGAFGRRHVVPFIPDFLKLYPGLRLELSFTDVRMDLLASGADLAIRIGPLIDSTLIARKLAG
HRRVVCASPSYLAGAPPLAAPRDLLRHNALIYTLQPTDRWFFRRGTEAGEPEEEVPIAGILRSDDSEALLDAALAGVGIA
LLPVWLVGEDIARGRLVRLLPDWFSMISTRPGGIYGIYPPHARISPKVRAFLDFIETRFGRPPYWDAGTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=35.2348993288591, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=35.4515050167224, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1789440, Length=300, Percent_Identity=30.6666666666667, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=33.7792642140468, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=31.7725752508361, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=28.8732394366197, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=32.2834645669291, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=28.7719298245614, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788706, Length=298, Percent_Identity=26.1744966442953, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082132, Length=297, Percent_Identity=24.9158249158249, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786448, Length=288, Percent_Identity=28.8194444444444, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787806, Length=250, Percent_Identity=27.2, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33953; Mature: 33953

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYLGALRLFGRAVELGSFSKAAEAQGAKVSTVSRAVAALEADLGVALFHRSTRRLHLTE
CCHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCHHEEECCCCEEEECC
PGEQFYAQVQAILRNLDEARDSVAAMQARPQGLLRLNLPGAFGRRHVVPFIPDFLKLYPG
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCC
LRLELSFTDVRMDLLASGADLAIRIGPLIDSTLIARKLAGHRRVVCASPSYLAGAPPLAA
CEEEEEHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC
PRDLLRHNALIYTLQPTDRWFFRRGTEAGEPEEEVPIAGILRSDDSEALLDAALAGVGIA
HHHHHHCCCEEEEECCCCHHHHHCCCCCCCCHHHCCEEEEEECCCHHHHHHHHHHHHHHH
LLPVWLVGEDIARGRLVRLLPDWFSMISTRPGGIYGIYPPHARISPKVRAFLDFIETRFG
HHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC
RPPYWDAGTG
CCCCCCCCCC
>Mature Secondary Structure
MDYLGALRLFGRAVELGSFSKAAEAQGAKVSTVSRAVAALEADLGVALFHRSTRRLHLTE
CCHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCHHEEECCCCEEEECC
PGEQFYAQVQAILRNLDEARDSVAAMQARPQGLLRLNLPGAFGRRHVVPFIPDFLKLYPG
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCC
LRLELSFTDVRMDLLASGADLAIRIGPLIDSTLIARKLAGHRRVVCASPSYLAGAPPLAA
CEEEEEHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC
PRDLLRHNALIYTLQPTDRWFFRRGTEAGEPEEEVPIAGILRSDDSEALLDAALAGVGIA
HHHHHHCCCEEEEECCCCHHHHHCCCCCCCCHHHCCEEEEEECCCHHHHHHHHHHHHHHH
LLPVWLVGEDIARGRLVRLLPDWFSMISTRPGGIYGIYPPHARISPKVRAFLDFIETRFG
HHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC
RPPYWDAGTG
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]