Click here to switch to the map view.

The map label for this gene is cydB [H]

Identifier: 148261031

GI number: 148261031

Start: 2238718

End: 2239743

Strand: Reverse

Name: cydB [H]

Synonym: Acry_2039

Alternate gene names: 148261031

Gene position: 2239743-2238718 (Counterclockwise)

Preceding gene: 148261032

Following gene: 148261030

Centisome position: 66.08

GC content: 68.91

Gene sequence:

>1026_bases
ATGCTCAACGCCCATACCCTGCCGATCATCTGGGGCTGCATCATGGCCTTCGTGATCTTCGCCTATGTCGTGCTCGACGG
GTTCGATCTCGGCGTCGGCATCCTGTTCGCGGCCGAGCGCAGCCGCGCCGAGCGGGACATCATGGTCAATTCCATCGCCC
CGGTCTGGGATGGCAACGAAACCTGGCTCGTGCTCGGCGGCTCCGGCCTCTACGGCGCCTTCCCCGAGGCCTACAGCGTG
ATCCTGCCGGCGGTCTACCCGCTGGTGATCACCATGCTGATCGGCCTCATCCTGCGCGGCGTCGCCTTCGAGTTCCGCTT
CCGCGCCCATACCGAGCGGCACCGGCTCAGCTGGGATTACGGGTTCTGGTTCGGCTCGGTCATCGCCGCCTTCTGCCAGG
GGGCGATCCTCGGCGCCGTGCTGCACGGCACCAAGGTCGCCGGCGGCCAGTTCGCCGGCGGGCCCTTCGCCTGGTTCTCC
GCCTTCTCGGTGTTCACCGGCCTTGCGGTGGTCTGCGGCTACGCGCTGCTCGGCGCCGCCTGGCTGGTCTGGCGCACCGA
GGGCGGGCTGCAGCTGCGGATGCGCCGCGAAGCCGCCCGGCTCACGGTGGGGATGCTCGCGGGCATCCTCGCCGTCAGCG
TCTGGACCCCGCTGCTCGACCACGCCTATGCCGTGCGCTGGTTCACCTGGCCGGGCCTCGCCGTCACCGGCCTCGCCCCG
CTCGCGGTGGCGGCGCTGGCCTTCTTCCTGTTCCGCGCCCTGCGCCACGGCGGCGCGGTGCATGACAGCACCGCCTTCCT
CTGCGCGCTCGGCCTGTTCCTCGCCAGCTTTCTCGGCCTCGGCTTCTCGCTGTTCCCGCACATCATCCCGCCCGGCGTGA
CGATCTGGCAGGCCGCATCCCCCGTCGGCTCGCAGGAATTCCTGCTTGTCGGCGCGGTCGTCCTCATTCCGGTCATCATC
GCCTACAACGCCTTTGCCTACACCATCTTCCACGGCAAGGTTGATCACGCGGCGTTCGATCATTGA

Upstream 100 bases:

>100_bases
TGGGCGAACCGCCGCTGCGCGACGACAAGCCGCTGCGCAGCCACGGCCCGCACCGCCTGCACGATCCCGCGCCGGCCCCG
AGCCCGGCGGAGTGATGGCC

Downstream 100 bases:

>100_bases
GCCCGCTCCCGCCGGTCCGCCACCGGACCGGCGGGATGGCTGGACAGCATGTCCAAGCCGTGTTGATACCATAGCCGCAG
GCAGCCACTCGCTGCCGCGC

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MLNAHTLPIIWGCIMAFVIFAYVVLDGFDLGVGILFAAERSRAERDIMVNSIAPVWDGNETWLVLGGSGLYGAFPEAYSV
ILPAVYPLVITMLIGLILRGVAFEFRFRAHTERHRLSWDYGFWFGSVIAAFCQGAILGAVLHGTKVAGGQFAGGPFAWFS
AFSVFTGLAVVCGYALLGAAWLVWRTEGGLQLRMRREAARLTVGMLAGILAVSVWTPLLDHAYAVRWFTWPGLAVTGLAP
LAVAALAFFLFRALRHGGAVHDSTAFLCALGLFLASFLGLGFSLFPHIIPPGVTIWQAASPVGSQEFLLVGAVVLIPVII
AYNAFAYTIFHGKVDHAAFDH

Sequences:

>Translated_341_residues
MLNAHTLPIIWGCIMAFVIFAYVVLDGFDLGVGILFAAERSRAERDIMVNSIAPVWDGNETWLVLGGSGLYGAFPEAYSV
ILPAVYPLVITMLIGLILRGVAFEFRFRAHTERHRLSWDYGFWFGSVIAAFCQGAILGAVLHGTKVAGGQFAGGPFAWFS
AFSVFTGLAVVCGYALLGAAWLVWRTEGGLQLRMRREAARLTVGMLAGILAVSVWTPLLDHAYAVRWFTWPGLAVTGLAP
LAVAALAFFLFRALRHGGAVHDSTAFLCALGLFLASFLGLGFSLFPHIIPPGVTIWQAASPVGSQEFLLVGAVVLIPVII
AYNAFAYTIFHGKVDHAAFDH
>Mature_341_residues
MLNAHTLPIIWGCIMAFVIFAYVVLDGFDLGVGILFAAERSRAERDIMVNSIAPVWDGNETWLVLGGSGLYGAFPEAYSV
ILPAVYPLVITMLIGLILRGVAFEFRFRAHTERHRLSWDYGFWFGSVIAAFCQGAILGAVLHGTKVAGGQFAGGPFAWFS
AFSVFTGLAVVCGYALLGAAWLVWRTEGGLQLRMRREAARLTVGMLAGILAVSVWTPLLDHAYAVRWFTWPGLAVTGLAP
LAVAALAFFLFRALRHGGAVHDSTAFLCALGLFLASFLGLGFSLFPHIIPPGVTIWQAASPVGSQEFLLVGAVVLIPVII
AYNAFAYTIFHGKVDHAAFDH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=380, Percent_Identity=27.1052631578947, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787213, Length=377, Percent_Identity=24.1379310344828, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36808; Mature: 36808

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNAHTLPIIWGCIMAFVIFAYVVLDGFDLGVGILFAAERSRAERDIMVNSIAPVWDGNE
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCC
TWLVLGGSGLYGAFPEAYSVILPAVYPLVITMLIGLILRGVAFEFRFRAHTERHRLSWDY
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
GFWFGSVIAAFCQGAILGAVLHGTKVAGGQFAGGPFAWFSAFSVFTGLAVVCGYALLGAA
HHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WLVWRTEGGLQLRMRREAARLTVGMLAGILAVSVWTPLLDHAYAVRWFTWPGLAVTGLAP
HHEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHH
LAVAALAFFLFRALRHGGAVHDSTAFLCALGLFLASFLGLGFSLFPHIIPPGVTIWQAAS
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEECCCC
PVGSQEFLLVGAVVLIPVIIAYNAFAYTIFHGKVDHAAFDH
CCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCC
>Mature Secondary Structure
MLNAHTLPIIWGCIMAFVIFAYVVLDGFDLGVGILFAAERSRAERDIMVNSIAPVWDGNE
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCC
TWLVLGGSGLYGAFPEAYSVILPAVYPLVITMLIGLILRGVAFEFRFRAHTERHRLSWDY
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
GFWFGSVIAAFCQGAILGAVLHGTKVAGGQFAGGPFAWFSAFSVFTGLAVVCGYALLGAA
HHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WLVWRTEGGLQLRMRREAARLTVGMLAGILAVSVWTPLLDHAYAVRWFTWPGLAVTGLAP
HHEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHH
LAVAALAFFLFRALRHGGAVHDSTAFLCALGLFLASFLGLGFSLFPHIIPPGVTIWQAAS
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEECCCC
PVGSQEFLLVGAVVLIPVIIAYNAFAYTIFHGKVDHAAFDH
CCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]