| Definition | Acidiphilium cryptum JF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_009484 |
| Length | 3,389,227 |
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The map label for this gene is 148260758
Identifier: 148260758
GI number: 148260758
Start: 1945426
End: 1946976
Strand: Reverse
Name: 148260758
Synonym: Acry_1763
Alternate gene names: NA
Gene position: 1946976-1945426 (Counterclockwise)
Preceding gene: 148260759
Following gene: 148260757
Centisome position: 57.45
GC content: 69.31
Gene sequence:
>1551_bases ATGTCCGATGTGACAATACCTTCTGGTGATACGCTGATTCTCAATGCATCGCTGACCAGCAACTTTTCATTTCCAACGAC GGGGTCGGCCCCGACCGATCTCGTCATCGAGCCGTCCGCCCTTTCCGTAACCCTCGTGGGGATCACGACGGCCGTCACCG CGATCGAACTGGGCGGCAACATCCAGCATTTCGGACCGAACGACACGATCGTCCTGGCCGATGCCACGACCGACTTCTCC AATTTCGACACCTCGCCCTCGGCGCCGAGCGATGTCATGACGTTCCAAAATATCGCCAGCCTCGCCGTGAGCCAGGATTT CAGGATTTACGCCTCGGATGGTCTGATCATCACCGACAGTCCCCTCATCAACCTCGAGTACGGACCGACACTGAATACGT CACTCGCGCCGTTCATCAACGCGATCGAGCAGTCCATGTTCGGCAGCATCCCTTCCACCGGCACGCTGACCATCTCGGTC GGCCTTAGCGATTTCGGCGACTCCTCGGCCGAACCCGGCCCTCCGTCCGAGTCCGGCGGATACGCCTTCACCATCACCAC GGGCAGCGACATCAACCCCTGCTTCGCCGCCGGCACGCAGATCCGCACCCCGGCCGGCGAGACCCCGGTCGAATCCTTGC GGGCCGGCGATGCCGTCCTCACCGCCACCGGCGCCGAACGCCGCGTGGTCTGGATCGGCCGCCGCACGCTCGACCTCAGC CGCCATCCGCGCCCCGAACTGGTCCGCCCGGTCCGCATCGCCGCCGGCGCGCTGGCCGATGGCGTCCCCGCGCGCGACCT CGTGGTCTCGCCCGACCACGCCCTGTTCCTCGACGGCGTGCTGGTCCAGGCGAAGGATCTGGTCGACGGCACCATGATCG CACCCGACCGCCGAATTTCCCGCGTCACCTATTTCCATGTCGAGCTCGACCGGCACGACATCCTGCTGGCCGAGGGCGCG CCGGCGGAAAGCTTCCTCGATACCGGCCATCGCGGCCTGTTCGAGAACGCCGGCGAACCGATCACCCTGCACCCCGACCT GATGCAGGCCCGGCGCGAGGCCGAAGGCTGCGCCCCGCTGGTCACCGGCGGCGACGCCCTGGCCGCGATCCGCGCCCGCC TCGCCGCGCGCCGCGCCGCGCAGGGCTTCGCCCTGGTCCGCGTCCGCCCCGCGCTCCGCCATGGCGACCTGATCATCGAG GCCAGCGAGGAGAAGCCCGGCACGTTCCGCTTCGCCCTGCCCGCGAACGCGACCGAATTCGAACTCCTCGCCGGCACCTT CGTCCCCGCCGAGGTCGACCCGGTCTCCACCGACCGCCGCCGCCTCGGCCTGTCGGTTGCCGGCCTCGCGCTGGACGGCG CGGCGCTCGACCTCGAAACCGCGATCCCAGCACCCGGCCGCCTGCCGCGCGCGGGCGGCGATGCCGGAGTCTGGACAAGC GGCAACGCCGGCATCCGCCTGCCCCGCGCCGGCGCCGAACTGGTGCTGACGCTGACCGCCCAAGCCCTGTTCTGGACCGC GCCGGCCGCCATGCGGCGCGCCAGCGCCTGA
Upstream 100 bases:
>100_bases TCGGCTGAAGCATTAAAAAAATTGAATCTCTTGTTGTCGTTGCTTATCATCGCGTCAGAATATTTCAAATTTCAGACATA TTTGAACGCGGGAGAGCGGC
Downstream 100 bases:
>100_bases TCTCCGCCGGCCCACCGGCCGCGCCCTGTGATGGTGGCGGGTGTGTGATGCACCCGCCACAAGCGTTTTTTTATCCCATG CCGGGCGCTTCCGATTGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: Outer Membrane Protein; Hemagglutinin-Related Protein; Type I Secretion Target Repeat-Containing Protein; Triple Helix Repeat-Containing Collagen; Adhesin Family Protein; Peptidase Metallopeptidase; Collagen Triple Helix Repeat-Containing Protein; Collagen Triple Helix Repeat; Peroxidase; Bifunctional Hemolysin/Adenylate Cyclase
Number of amino acids: Translated: 516; Mature: 515
Protein sequence:
>516_residues MSDVTIPSGDTLILNASLTSNFSFPTTGSAPTDLVIEPSALSVTLVGITTAVTAIELGGNIQHFGPNDTIVLADATTDFS NFDTSPSAPSDVMTFQNIASLAVSQDFRIYASDGLIITDSPLINLEYGPTLNTSLAPFINAIEQSMFGSIPSTGTLTISV GLSDFGDSSAEPGPPSESGGYAFTITTGSDINPCFAAGTQIRTPAGETPVESLRAGDAVLTATGAERRVVWIGRRTLDLS RHPRPELVRPVRIAAGALADGVPARDLVVSPDHALFLDGVLVQAKDLVDGTMIAPDRRISRVTYFHVELDRHDILLAEGA PAESFLDTGHRGLFENAGEPITLHPDLMQARREAEGCAPLVTGGDALAAIRARLAARRAAQGFALVRVRPALRHGDLIIE ASEEKPGTFRFALPANATEFELLAGTFVPAEVDPVSTDRRRLGLSVAGLALDGAALDLETAIPAPGRLPRAGGDAGVWTS GNAGIRLPRAGAELVLTLTAQALFWTAPAAMRRASA
Sequences:
>Translated_516_residues MSDVTIPSGDTLILNASLTSNFSFPTTGSAPTDLVIEPSALSVTLVGITTAVTAIELGGNIQHFGPNDTIVLADATTDFS NFDTSPSAPSDVMTFQNIASLAVSQDFRIYASDGLIITDSPLINLEYGPTLNTSLAPFINAIEQSMFGSIPSTGTLTISV GLSDFGDSSAEPGPPSESGGYAFTITTGSDINPCFAAGTQIRTPAGETPVESLRAGDAVLTATGAERRVVWIGRRTLDLS RHPRPELVRPVRIAAGALADGVPARDLVVSPDHALFLDGVLVQAKDLVDGTMIAPDRRISRVTYFHVELDRHDILLAEGA PAESFLDTGHRGLFENAGEPITLHPDLMQARREAEGCAPLVTGGDALAAIRARLAARRAAQGFALVRVRPALRHGDLIIE ASEEKPGTFRFALPANATEFELLAGTFVPAEVDPVSTDRRRLGLSVAGLALDGAALDLETAIPAPGRLPRAGGDAGVWTS GNAGIRLPRAGAELVLTLTAQALFWTAPAAMRRASA >Mature_515_residues SDVTIPSGDTLILNASLTSNFSFPTTGSAPTDLVIEPSALSVTLVGITTAVTAIELGGNIQHFGPNDTIVLADATTDFSN FDTSPSAPSDVMTFQNIASLAVSQDFRIYASDGLIITDSPLINLEYGPTLNTSLAPFINAIEQSMFGSIPSTGTLTISVG LSDFGDSSAEPGPPSESGGYAFTITTGSDINPCFAAGTQIRTPAGETPVESLRAGDAVLTATGAERRVVWIGRRTLDLSR HPRPELVRPVRIAAGALADGVPARDLVVSPDHALFLDGVLVQAKDLVDGTMIAPDRRISRVTYFHVELDRHDILLAEGAP AESFLDTGHRGLFENAGEPITLHPDLMQARREAEGCAPLVTGGDALAAIRARLAARRAAQGFALVRVRPALRHGDLIIEA SEEKPGTFRFALPANATEFELLAGTFVPAEVDPVSTDRRRLGLSVAGLALDGAALDLETAIPAPGRLPRAGGDAGVWTSG NAGIRLPRAGAELVLTLTAQALFWTAPAAMRRASA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53940; Mature: 53809
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVTIPSGDTLILNASLTSNFSFPTTGSAPTDLVIEPSALSVTLVGITTAVTAIELGGN CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCEEEEEEEHHEEEEEEEECCC IQHFGPNDTIVLADATTDFSNFDTSPSAPSDVMTFQNIASLAVSQDFRIYASDGLIITDS EEEECCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEECC PLINLEYGPTLNTSLAPFINAIEQSMFGSIPSTGTLTISVGLSDFGDSSAEPGPPSESGG CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC YAFTITTGSDINPCFAAGTQIRTPAGETPVESLRAGDAVLTATGAERRVVWIGRRTLDLS EEEEEECCCCCCHHHHCCCEEECCCCCCCHHHHHCCCEEEEECCCCEEEEEEECEEECCC RHPRPELVRPVRIAAGALADGVPARDLVVSPDHALFLDGVLVQAKDLVDGTMIAPDRRIS CCCCHHHCCHHHHHHHHHHCCCCCCCEEECCCCEEEECCEEEEEHHHCCCEEECCCCCEE RVTYFHVELDRHDILLAEGAPAESFLDTGHRGLFENAGEPITLHPDLMQARREAEGCAPL EEEEEEEEECCCEEEEECCCCHHHHHHCCCCCHHHCCCCCEEECHHHHHHHHHHCCCCEE VTGGDALAAIRARLAARRAAQGFALVRVRPALRHGDLIIEASEEKPGTFRFALPANATEF EECCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCCCEE ELLAGTFVPAEVDPVSTDRRRLGLSVAGLALDGAALDLETAIPAPGRLPRAGGDAGVWTS EEEEEEECCCCCCCCCCCHHHHCCEEEEEEECCCEEEEHHCCCCCCCCCCCCCCCCEEEC GNAGIRLPRAGAELVLTLTAQALFWTAPAAMRRASA CCCCEEECCCCCEEEEEEEEHHHHHCCHHHHHHCCC >Mature Secondary Structure SDVTIPSGDTLILNASLTSNFSFPTTGSAPTDLVIEPSALSVTLVGITTAVTAIELGGN CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCEEEEEEEHHEEEEEEEECCC IQHFGPNDTIVLADATTDFSNFDTSPSAPSDVMTFQNIASLAVSQDFRIYASDGLIITDS EEEECCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEECC PLINLEYGPTLNTSLAPFINAIEQSMFGSIPSTGTLTISVGLSDFGDSSAEPGPPSESGG CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC YAFTITTGSDINPCFAAGTQIRTPAGETPVESLRAGDAVLTATGAERRVVWIGRRTLDLS EEEEEECCCCCCHHHHCCCEEECCCCCCCHHHHHCCCEEEEECCCCEEEEEEECEEECCC RHPRPELVRPVRIAAGALADGVPARDLVVSPDHALFLDGVLVQAKDLVDGTMIAPDRRIS CCCCHHHCCHHHHHHHHHHCCCCCCCEEECCCCEEEECCEEEEEHHHCCCEEECCCCCEE RVTYFHVELDRHDILLAEGAPAESFLDTGHRGLFENAGEPITLHPDLMQARREAEGCAPL EEEEEEEEECCCEEEEECCCCHHHHHHCCCCCHHHCCCCCEEECHHHHHHHHHHCCCCEE VTGGDALAAIRARLAARRAAQGFALVRVRPALRHGDLIIEASEEKPGTFRFALPANATEF EECCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCCCEE ELLAGTFVPAEVDPVSTDRRRLGLSVAGLALDGAALDLETAIPAPGRLPRAGGDAGVWTS EEEEEEECCCCCCCCCCCHHHHCCEEEEEEECCCEEEEHHCCCCCCCCCCCCCCCCEEEC GNAGIRLPRAGAELVLTLTAQALFWTAPAAMRRASA CCCCEEECCCCCEEEEEEEEHHHHHCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA