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The map label for this gene is csgD [C]

Identifier: 148260734

GI number: 148260734

Start: 1916846

End: 1917649

Strand: Reverse

Name: csgD [C]

Synonym: Acry_1738

Alternate gene names: 148260734

Gene position: 1917649-1916846 (Counterclockwise)

Preceding gene: 148260735

Following gene: 148260731

Centisome position: 56.58

GC content: 70.15

Gene sequence:

>804_bases
ATGCAGCAGAATAATACCGAAAAAGGGTCGGTCGCGACGCCGTTCGTGCCCTTTCTGGCGCGATCGCTGGAGCGTCCGCG
CCTCCCTTATTCATCATCGCCCGTCCGCGCCGCCGCGGTCGAGGCGGCGGTGCCGGGGCGCACCCGGATCGGCCTCGTCG
ATTCCTCGCGGCTGACGCGCGAATGCCTCGCCAGCGCCCTCGTCGCCCAGGGCGCCGATTTCGCGGTCCGCAGCTTCGTC
ACCGCCGAGGACTGCATCGATGCGGCCGGCGAGGGGTTCGATCTCCTGCTCTGCCACGCGCATGAGGACGGGCCGGCGGC
GAAGGCCGTCCTCGCCGACATCGCCGCCCTGCGCGAGGCCTTTCCCGGCCTGCCGATCGTCGTCCTGCACGATGCCGCCG
AGACGCCCGACACCGGCTTCGTCCGCCTCCTGTTCCAGGAAGGCGCGCAGGGCTTCGTCCCGACCCGCATGGTCGGCATC
CCGCTCGCCGTCGCCGCCATCCGCTTCGTCCAGGCGGGCGGCCGGTTCGCCCCGGTCGATCTCCTGCTCGACGACCGTCC
GCCGCCCCCCTCCGGCTTCGCGCCGGGCGACGATTTCCTGACGCCGCGCCAGAAGCTCGTCTTCGCCCATCTGCGCCAGG
GCAAGGCGAACAAGATCATCGCCTACGAGCTGGGCGTCAGCGAAAGCACGGTGAAGGTCCACATCAAGAACATCATGCGC
AAGATCGGCGCCACCAACCGCACCCAGGCGGTCTACAAGGCGCAGTCTGCGCTGCTGCGCGCCTTCGCGCCGGATGCGGG
CTGA

Upstream 100 bases:

>100_bases
ATCCCGGCAATATCATTTCCGATTTATTTATTGTCCGAATAGATGGCGGAAATGAACCGCCGACATTCGTCATTTTGCAA
TATTTCCGGGAAGACTCGAA

Downstream 100 bases:

>100_bases
GGCCGCGCGTCCGGTTCAGTCGGGCAGGTCGAGATCGCCCTCGACGATCCTGGTCCCGCCGCAGACGAAGCCGCCGCTCG
CGGTCACCGAGGGCGTGCCA

Product: response regulator receiver protein

Products: NA

Alternate protein names: Two Component Transcriptional Regulator LuxR Family; Two-Component Response Regulator; LuxR Family Transcriptional Regulator; Transcriptional Regulator LuxR Family; Two Component Transcriptional Regulator; Response Regulator; Two-Component Response Regulator Protein; Response Regulator Receiver Protein; Response Regulator Receiver Domain Protein; Transcriptional Regulator Protein LuxR Family; Regulatory Protein; Glycerol Metabolism Activator AgmR; Sigma-70 Region 4 Family; Response Regulator Protein; Positive Regulator AgmR; Two Component Response Regulator; Ranscriptional Regulatory Protein Degu.

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MQQNNTEKGSVATPFVPFLARSLERPRLPYSSSPVRAAAVEAAVPGRTRIGLVDSSRLTRECLASALVAQGADFAVRSFV
TAEDCIDAAGEGFDLLLCHAHEDGPAAKAVLADIAALREAFPGLPIVVLHDAAETPDTGFVRLLFQEGAQGFVPTRMVGI
PLAVAAIRFVQAGGRFAPVDLLLDDRPPPPSGFAPGDDFLTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMR
KIGATNRTQAVYKAQSALLRAFAPDAG

Sequences:

>Translated_267_residues
MQQNNTEKGSVATPFVPFLARSLERPRLPYSSSPVRAAAVEAAVPGRTRIGLVDSSRLTRECLASALVAQGADFAVRSFV
TAEDCIDAAGEGFDLLLCHAHEDGPAAKAVLADIAALREAFPGLPIVVLHDAAETPDTGFVRLLFQEGAQGFVPTRMVGI
PLAVAAIRFVQAGGRFAPVDLLLDDRPPPPSGFAPGDDFLTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMR
KIGATNRTQAVYKAQSALLRAFAPDAG
>Mature_267_residues
MQQNNTEKGSVATPFVPFLARSLERPRLPYSSSPVRAAAVEAAVPGRTRIGLVDSSRLTRECLASALVAQGADFAVRSFV
TAEDCIDAAGEGFDLLLCHAHEDGPAAKAVLADIAALREAFPGLPIVVLHDAAETPDTGFVRLLFQEGAQGFVPTRMVGI
PLAVAAIRFVQAGGRFAPVDLLLDDRPPPPSGFAPGDDFLTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMR
KIGATNRTQAVYKAQSALLRAFAPDAG

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28390; Mature: 28390

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQNNTEKGSVATPFVPFLARSLERPRLPYSSSPVRAAAVEAAVPGRTRIGLVDSSRLTR
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCHHHHH
ECLASALVAQGADFAVRSFVTAEDCIDAAGEGFDLLLCHAHEDGPAAKAVLADIAALREA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
FPGLPIVVLHDAAETPDTGFVRLLFQEGAQGFVPTRMVGIPLAVAAIRFVQAGGRFAPVD
CCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
LLLDDRPPPPSGFAPGDDFLTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMR
EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
KIGATNRTQAVYKAQSALLRAFAPDAG
HHCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQQNNTEKGSVATPFVPFLARSLERPRLPYSSSPVRAAAVEAAVPGRTRIGLVDSSRLTR
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCHHHHH
ECLASALVAQGADFAVRSFVTAEDCIDAAGEGFDLLLCHAHEDGPAAKAVLADIAALREA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
FPGLPIVVLHDAAETPDTGFVRLLFQEGAQGFVPTRMVGIPLAVAAIRFVQAGGRFAPVD
CCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
LLLDDRPPPPSGFAPGDDFLTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMR
EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
KIGATNRTQAVYKAQSALLRAFAPDAG
HHCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA