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The map label for this gene is yciR [C]

Identifier: 148260551

GI number: 148260551

Start: 1714785

End: 1715771

Strand: Reverse

Name: yciR [C]

Synonym: Acry_1553

Alternate gene names: 148260551

Gene position: 1715771-1714785 (Counterclockwise)

Preceding gene: 148260552

Following gene: 148260550

Centisome position: 50.62

GC content: 70.21

Gene sequence:

>987_bases
TTGTTCGCTCAATCCACCATCGTCCCCACGGTCGAAGTCCTGCAGGCGTTGCTGGATTCGATTCCGAACCCGGTCATCGT
GATCGACCGGGAGCATCGGCTCGTGCTGGTCAATCAGGCGATGGCGGATTTCATGGGCCGGCCGCGGGAGGCGTTGCTGG
GGCAGACCGGGGCGGGACTCCTGCCGCAGGCGCAGCTCGAGGTGTTCTGGCGGATCGACGATCAGGTCTTCGCCACCGGC
CTGCCGAACGAGAACGAGGAGATCGTGACCGGGGCCGGCGGACGGCAGCGCATCGTCATCACCCGCAAGCGGCTGATCCA
TCTCGACACCGCCGAGGGCAGGGCGCCGTTCATCGTCGCCGTCATTTCCGATGTGACGCGCTTCCGCGAGGCGGAGGCGC
GGGCCCACCACCTTGCCGCGCATGACCTGCTGACCGGACTGCCCAATCGCGGGCAGCTGACCCTGCGCCTCGCGCAGGCG
CTGGCCGCCGCGCGCGGCAGCGGCGAGGTCGTTGGCCTGCTGCTGGTCGATCTCGACGGGTTCAAGCCGATCAACGACCA
GTTCGGCCACCTCGTGGGCGACAACGTGCTGCGCATCGTCGCCCGGCGGCTGAGCGGCGTGATCCGCGCCGGGGATACGG
TCGCGCGGCTGGGTGGCGACGAGTTCTGCGTGATCCAGCTCGGCATTCGCGACGCGGCGCAGGCGCTGCACCTGGCCGAC
CGCATCGTCGCCGCCATCGGCCACCCGTTCGCGACCGATCCGGAACCGATCGTCGTTTCCGCCTCGGTCGGGGTGGCGCT
GTGCCCGTTCGACGGCGACGATCCGGAGACGTTACTCGACCGCGCCGACCGAGCGCTCTACGCTGTCAAGCATGCCGGGC
GGGGGAGTTACCGCCGCTACGAGGCATCGATGCAGCGCCTTTCGGCCTCGCCGGTGATGCGCCCGGCCGGGCCGGACGGC
GCCGCCGCCGCCGGAGGGGAGCCATGA

Upstream 100 bases:

>100_bases
AGCGCCATGCGAACATCAAATGGGCCGTTAATTAATCGAGTAGTAATTATTTCGGGCAATCTTCCGGTTTTCCGAGACGG
TCGTCTGGTCCGAGATATTC

Downstream 100 bases:

>100_bases
GCCGCACCGTGCCCGACGATGTGACGACGCTCGGCGCGCTGGTCCTGGGGGGGCGCGGCGTGGTGCTCTGGGATCTCGAT
CCGGTGGCGGGCCTGATCCG

Product: PAS/PAC sensor-containing diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MFAQSTIVPTVEVLQALLDSIPNPVIVIDREHRLVLVNQAMADFMGRPREALLGQTGAGLLPQAQLEVFWRIDDQVFATG
LPNENEEIVTGAGGRQRIVITRKRLIHLDTAEGRAPFIVAVISDVTRFREAEARAHHLAAHDLLTGLPNRGQLTLRLAQA
LAAARGSGEVVGLLLVDLDGFKPINDQFGHLVGDNVLRIVARRLSGVIRAGDTVARLGGDEFCVIQLGIRDAAQALHLAD
RIVAAIGHPFATDPEPIVVSASVGVALCPFDGDDPETLLDRADRALYAVKHAGRGSYRRYEASMQRLSASPVMRPAGPDG
AAAAGGEP

Sequences:

>Translated_328_residues
MFAQSTIVPTVEVLQALLDSIPNPVIVIDREHRLVLVNQAMADFMGRPREALLGQTGAGLLPQAQLEVFWRIDDQVFATG
LPNENEEIVTGAGGRQRIVITRKRLIHLDTAEGRAPFIVAVISDVTRFREAEARAHHLAAHDLLTGLPNRGQLTLRLAQA
LAAARGSGEVVGLLLVDLDGFKPINDQFGHLVGDNVLRIVARRLSGVIRAGDTVARLGGDEFCVIQLGIRDAAQALHLAD
RIVAAIGHPFATDPEPIVVSASVGVALCPFDGDDPETLLDRADRALYAVKHAGRGSYRRYEASMQRLSASPVMRPAGPDG
AAAAGGEP
>Mature_328_residues
MFAQSTIVPTVEVLQALLDSIPNPVIVIDREHRLVLVNQAMADFMGRPREALLGQTGAGLLPQAQLEVFWRIDDQVFATG
LPNENEEIVTGAGGRQRIVITRKRLIHLDTAEGRAPFIVAVISDVTRFREAEARAHHLAAHDLLTGLPNRGQLTLRLAQA
LAAARGSGEVVGLLLVDLDGFKPINDQFGHLVGDNVLRIVARRLSGVIRAGDTVARLGGDEFCVIQLGIRDAAQALHLAD
RIVAAIGHPFATDPEPIVVSASVGVALCPFDGDDPETLLDRADRALYAVKHAGRGSYRRYEASMQRLSASPVMRPAGPDG
AAAAGGEP

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=284, Percent_Identity=30.2816901408451, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788381, Length=195, Percent_Identity=34.8717948717949, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI145693134, Length=206, Percent_Identity=33.495145631068, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI87082007, Length=160, Percent_Identity=40, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=35, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87081977, Length=167, Percent_Identity=35.9281437125749, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1786584, Length=182, Percent_Identity=31.3186813186813, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=33.9506172839506, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=37.888198757764, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081974, Length=84, Percent_Identity=44.047619047619, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=29.5180722891566, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787802, Length=135, Percent_Identity=34.0740740740741, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 35084; Mature: 35084

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAQSTIVPTVEVLQALLDSIPNPVIVIDREHRLVLVNQAMADFMGRPREALLGQTGAGL
CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEHHHHHHHHCCCHHHHHCCCCCCC
LPQAQLEVFWRIDDQVFATGLPNENEEIVTGAGGRQRIVITRKRLIHLDTAEGRAPFIVA
CCHHEEEEEEEECCEEEECCCCCCCCEEEECCCCCEEEEEEEEEEEEEECCCCCCCEEEH
VISDVTRFREAEARAHHLAAHDLLTGLPNRGQLTLRLAQALAAARGSGEVVGLLLVDLDG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCEEEEEEEECCC
FKPINDQFGHLVGDNVLRIVARRLSGVIRAGDTVARLGGDEFCVIQLGIRDAAQALHLAD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECHHHHHHHHHHHH
RIVAAIGHPFATDPEPIVVSASVGVALCPFDGDDPETLLDRADRALYAVKHAGRGSYRRY
HHHHHHCCCCCCCCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
EASMQRLSASPVMRPAGPDGAAAAGGEP
HHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFAQSTIVPTVEVLQALLDSIPNPVIVIDREHRLVLVNQAMADFMGRPREALLGQTGAGL
CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEHHHHHHHHCCCHHHHHCCCCCCC
LPQAQLEVFWRIDDQVFATGLPNENEEIVTGAGGRQRIVITRKRLIHLDTAEGRAPFIVA
CCHHEEEEEEEECCEEEECCCCCCCCEEEECCCCCEEEEEEEEEEEEEECCCCCCCEEEH
VISDVTRFREAEARAHHLAAHDLLTGLPNRGQLTLRLAQALAAARGSGEVVGLLLVDLDG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCEEEEEEEECCC
FKPINDQFGHLVGDNVLRIVARRLSGVIRAGDTVARLGGDEFCVIQLGIRDAAQALHLAD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECHHHHHHHHHHHH
RIVAAIGHPFATDPEPIVVSASVGVALCPFDGDDPETLLDRADRALYAVKHAGRGSYRRY
HHHHHHCCCCCCCCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
EASMQRLSASPVMRPAGPDGAAAAGGEP
HHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]