Definition Acidiphilium cryptum JF-5 chromosome, complete genome.
Accession NC_009484
Length 3,389,227

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The map label for this gene is xylA [H]

Identifier: 148260264

GI number: 148260264

Start: 1406539

End: 1407609

Strand: Reverse

Name: xylA [H]

Synonym: Acry_1261

Alternate gene names: 148260264

Gene position: 1407609-1406539 (Counterclockwise)

Preceding gene: 148260265

Following gene: 148260263

Centisome position: 41.53

GC content: 71.62

Gene sequence:

>1071_bases
ATGGGGCTGCTCGACCGTCTCTTCGGCGGCAGGCAGGGCGCGGCGAGCGTCCGCGTCCTGCCCGCGGATCTCAGCTTCGA
CGTGCCGCCGAAGCAGACCATCCTGCAGGCCGCGCTCGACCAGGGCATCGCCTATCCGCACAGCTGCCGTGTGGGCTCCT
GCGGCACCTGCAAGACCAGGCTGGTCGAGGGCGAGGTGCGCGAACTCACCGACAAATCCTACCTCCTGACCGACGAGGAG
ATGCGCGCCGGCGTCATCCTCGCCTGCCAGTCGGTGCCGAAGGGCCCGGTCGTTCTCGAGAACGACCGGCTTTCCCTCGG
CGGCCCCCGGCATGACGTGATCGCCGCCCGCGCCAGCATCGCAGCACTCGACCGCATGACGCCGGACATCATGCGCCTGT
CCGTGACGCTCGATGCCCCGCTCGCCTACACCGCCGGCCAGTATGCCGAGCTGGCACGGCCCGGCGACGAGGCGCGGCAG
TTCTCCTTCATCGACCCGCCCTCCGGCCCGGCGGCGACCACCGCCCGCTTCTTCATCCGCCACGTCCCCGGCGGCGCCGT
CACCTCCTGGCTGTTCGAGGCGGCACGCCCCGGCGACACGCTCGACCTGCGCGGCCCGTTCGGCGATTTCTGGCTCCGCC
CCGGCACCGCCCCCATCGTCGCCATCGCCGGCGGATCGGGGCTCGGTCCGGTCAAGGCGGTGCTCGAACAGGCGCGGGCC
GACCGCGTGCCGCGCGACGCGATCCTGATTTTCGGCGTCCGCACCAGGGCCGATCTCTACGCGCTCGACGAGATTTCGCT
TCTCACCCGCAGCTGGATTTCCCGTTTCACCTTCGTGCCGGTCCTCTCGGCCGAGCCGGCGGGCTCTGACTGGTCTGGCG
CGCGGGGTTTCGTGCACGAGCATCTCGCCGCGCTCGGCGTGGCACTCGCCGGCCATCAGGCCTATCTCTGCGGTCCGCCC
GTGATGATCGACGCCGCACTGCCGGTGCTGCGCGCGGCGGGCATCGCGGCGGCCGACATTCACTACGACGCCTTCACCGA
CCGCTCGACCGGCGCGATCGCCGCCGCCTGA

Upstream 100 bases:

>100_bases
CGAATTCCCGCTGATCGAGGCGGCGAATGCCCGCAGCGGCGTGCCCGAGTTTGCCGCCTCGCGCGCGCATCTCGCCACCC
TGGCCGCGGCGGAGTAACCG

Downstream 100 bases:

>100_bases
GCGACGGCGGCCCGGAAAGGGAGATTGACGACATGGACTTGATCACTGCCCTCTGGTGGCTCGCCGGCATCGCCGGCGCC
GGCGCCCTCATTGCCGCGCG

Product: ferredoxin

Products: NA

Alternate protein names: Ferredoxin; Ferredoxin--NAD(+) reductase [H]

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MGLLDRLFGGRQGAASVRVLPADLSFDVPPKQTILQAALDQGIAYPHSCRVGSCGTCKTRLVEGEVRELTDKSYLLTDEE
MRAGVILACQSVPKGPVVLENDRLSLGGPRHDVIAARASIAALDRMTPDIMRLSVTLDAPLAYTAGQYAELARPGDEARQ
FSFIDPPSGPAATTARFFIRHVPGGAVTSWLFEAARPGDTLDLRGPFGDFWLRPGTAPIVAIAGGSGLGPVKAVLEQARA
DRVPRDAILIFGVRTRADLYALDEISLLTRSWISRFTFVPVLSAEPAGSDWSGARGFVHEHLAALGVALAGHQAYLCGPP
VMIDAALPVLRAAGIAAADIHYDAFTDRSTGAIAAA

Sequences:

>Translated_356_residues
MGLLDRLFGGRQGAASVRVLPADLSFDVPPKQTILQAALDQGIAYPHSCRVGSCGTCKTRLVEGEVRELTDKSYLLTDEE
MRAGVILACQSVPKGPVVLENDRLSLGGPRHDVIAARASIAALDRMTPDIMRLSVTLDAPLAYTAGQYAELARPGDEARQ
FSFIDPPSGPAATTARFFIRHVPGGAVTSWLFEAARPGDTLDLRGPFGDFWLRPGTAPIVAIAGGSGLGPVKAVLEQARA
DRVPRDAILIFGVRTRADLYALDEISLLTRSWISRFTFVPVLSAEPAGSDWSGARGFVHEHLAALGVALAGHQAYLCGPP
VMIDAALPVLRAAGIAAADIHYDAFTDRSTGAIAAA
>Mature_355_residues
GLLDRLFGGRQGAASVRVLPADLSFDVPPKQTILQAALDQGIAYPHSCRVGSCGTCKTRLVEGEVRELTDKSYLLTDEEM
RAGVILACQSVPKGPVVLENDRLSLGGPRHDVIAARASIAALDRMTPDIMRLSVTLDAPLAYTAGQYAELARPGDEARQF
SFIDPPSGPAATTARFFIRHVPGGAVTSWLFEAARPGDTLDLRGPFGDFWLRPGTAPIVAIAGGSGLGPVKAVLEQARAD
RVPRDAILIFGVRTRADLYALDEISLLTRSWISRFTFVPVLSAEPAGSDWSGARGFVHEHLAALGVALAGHQAYLCGPPV
MIDAALPVLRAAGIAAADIHYDAFTDRSTGAIAAA

Specific function: Oxidizes toluene and xylenes to (methyl)benzyl alcohols. The enzyme has a broad specificity and also oxidizes (methyl)benzyl alcohols to (methyl)benzaldehydes and indole to indoxyl [H]

COG id: COG0543

COG function: function code HC; 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding FR-type domain [H]

Homologues:

Organism=Escherichia coli, GI1787658, Length=241, Percent_Identity=25.7261410788382, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788903, Length=201, Percent_Identity=29.8507462686567, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR017927
- InterPro:   IPR001041
- InterPro:   IPR001709
- InterPro:   IPR008333
- InterPro:   IPR001433
- InterPro:   IPR001221
- InterPro:   IPR017938 [H]

Pfam domain/function: PF00970 FAD_binding_6; PF00111 Fer2; PF00175 NAD_binding_1 [H]

EC number: =1.18.1.3 [H]

Molecular weight: Translated: 37673; Mature: 37542

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLLDRLFGGRQGAASVRVLPADLSFDVPPKQTILQAALDQGIAYPHSCRVGSCGTCKTR
CCCHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
LVEGEVRELTDKSYLLTDEEMRAGVILACQSVPKGPVVLENDRLSLGGPRHDVIAARASI
EECCHHHHHCCCCEEEECHHHCCCEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
AALDRMTPDIMRLSVTLDAPLAYTAGQYAELARPGDEARQFSFIDPPSGPAATTARFFIR
HHHHHCCCCCEEEEEEECCCCHHCCCCHHHHCCCCCHHHEEECCCCCCCCHHHHHHHHHH
HVPGGAVTSWLFEAARPGDTLDLRGPFGDFWLRPGTAPIVAIAGGSGLGPVKAVLEQARA
CCCCHHHHHHHHHHCCCCCEEECCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHH
DRVPRDAILIFGVRTRADLYALDEISLLTRSWISRFTFVPVLSAEPAGSDWSGARGFVHE
CCCCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHH
HLAALGVALAGHQAYLCGPPVMIDAALPVLRAAGIAAADIHYDAFTDRSTGAIAAA
HHHHHHHHHCCCCEEEECCCEEEHHHHHHHHHCCCEEEEEEECCCCCCCCCCEECC
>Mature Secondary Structure 
GLLDRLFGGRQGAASVRVLPADLSFDVPPKQTILQAALDQGIAYPHSCRVGSCGTCKTR
CCHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
LVEGEVRELTDKSYLLTDEEMRAGVILACQSVPKGPVVLENDRLSLGGPRHDVIAARASI
EECCHHHHHCCCCEEEECHHHCCCEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
AALDRMTPDIMRLSVTLDAPLAYTAGQYAELARPGDEARQFSFIDPPSGPAATTARFFIR
HHHHHCCCCCEEEEEEECCCCHHCCCCHHHHCCCCCHHHEEECCCCCCCCHHHHHHHHHH
HVPGGAVTSWLFEAARPGDTLDLRGPFGDFWLRPGTAPIVAIAGGSGLGPVKAVLEQARA
CCCCHHHHHHHHHHCCCCCEEECCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHH
DRVPRDAILIFGVRTRADLYALDEISLLTRSWISRFTFVPVLSAEPAGSDWSGARGFVHE
CCCCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHH
HLAALGVALAGHQAYLCGPPVMIDAALPVLRAAGIAAADIHYDAFTDRSTGAIAAA
HHHHHHHHHCCCCEEEECCCEEEHHHHHHHHHCCCEEEEEEECCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1999388 [H]