| Definition | Acidiphilium cryptum JF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_009484 |
| Length | 3,389,227 |
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The map label for this gene is 148260251
Identifier: 148260251
GI number: 148260251
Start: 1388995
End: 1390677
Strand: Reverse
Name: 148260251
Synonym: Acry_1248
Alternate gene names: NA
Gene position: 1390677-1388995 (Counterclockwise)
Preceding gene: 148260252
Following gene: 148260245
Centisome position: 41.03
GC content: 70.29
Gene sequence:
>1683_bases ATGACGGGTACTTTCGGGGCGCGACGCGGGACCCGCGGCGCGGTGGGCCTTGGCGTGCCGGCGATACTGCTGCTGGCCGG CCTGGCACCGGCGGCGCGGGCGCAGCTGGCGCCGCATATCATCAACCAGAACGAGCTCGGGCAGAGCGTGCGGCTGCCCA ACCTGGCGAAGGAGCAGGTGCCGAAGCAGAAGCCGCCGACACCTTCGGTGTCGGGCATCTCGCCGTTCGTGCTGCGCGGG GTGCGGGTCGAGGGCGCCACGACGCTGCCGCCCGCCGCGGTGGCGGCGACCTGGCGGGGGATGGTCGGGCATCGCGTCGG CAGCGCGCAGCTTTCGGCGATCCTGATCGCGATCGGGCGGCTGTGCCAGCATCAGGGGCTGGCGCTCTATTCGGTGTCGC TGCCGCAGCAGAACTTCGCCGGCGGCCAGGTGGTCGTGCGGGTGATCGAGGGGCATGTCGGCGCGGTCACGATCGAGGGC AACACGAAGGGCGCGAGCCTCGGGCTGCTGAAGCATTACGCGGCGCGGATCGTCGCGGACCAGCCGCTGCACCGGGCGAC GCTGGAGCGAAACCTGCTGCTGATGCAGTCGATTCCCGGCCTCAAGGTGGGCAGCGAGCTGCGGCCGATGCCGGGGCAGC CCGGGGTCGTGCGGCTGCTGCTGGGGATTCATCGCCGGACGGTGGAGGCGGGGGTCGACGTGAACAATGCCGGCGACCGC CAGCTCGACATCGTGCAGGGCACGGCGAACGTGACGGTGAACGGGCTGTTCCGCCAGGGCGAGCGCGACCAGCTGGTGTT CGGCGCGCCGGCGAGGATCCGCCGCTACCAGTATTACGGGATCGTGCATCAGGAGCCGATCGGGACCAACGGGACGACCG TGACCGTCACGATGGGCGAGCTGATCACCCATCCGGTCGGGGCGATCAATTCGGGGACGGCGCAGATCGCGAGCGTGCGG CTGTCCGACCCGCTGATCTATACGCAGACCCGGCAGCTCGATGCCTCGGTGGAGGCGGACTACCTGAACAGCAACGAGGC GCTGCTCGGGCAGACGGCGGTCTCGGAGCGGACGCGGACGCTGCGGGAAGGGCTGATCTTCGCGCGGGCGGGGGACTGGA ACGGGATCGACAGCGGGTCGTTCACGGTGAGCGAGGGGATCAACGCGCTGGGGGCGCGGCGCGGCAGCCTCGCCTATGGC GGGCCGGGCTTCACCAAGTTCGACGTGAGCCTGGTGCGGCTGCAGGCGCTGCCGAAATCGTTCTTCCTCACCGTGCGGGC CAACGCCCAGTACGCGCTGAACCATCTGCCGGGGAGCGAGCAGTTCCTGTTCGGCGGCAGCGAGTTCGGCCGGGCCTATC CGGCGGCGGTGATGGCGGGCGATAGCGGTATCGAGATGTCCGCCGAGCTGAGCCACAAGCTGCCCTTGCTCCAGCACGTC GCGCCGAAGCTGATCTCGGGGCTGGCGGCGTTCGGCTATGCCGACTGGGGCCGGATCTGGAACCGGCAGACGATCTACCA GTATCCGGTGGATACCGGCGCATCGGCCGGCGGGGGCGTGCGGATGCTGCTGCTGCGCCATTTCGAGCTGACGCTCGGCG CCGGCAACGAGCTGGTGAAGCCGCGCGAGGCGGCGAAGCTGGAGCGCTGGCGCTTCCTCTTCGCCGTCTCGGGCCGGTTC TGA
Upstream 100 bases:
>100_bases TCTAAGTCTGGAAGAGGGCGGCGGCGCAAGCTGCCGCCCTTGCTGTCTCTGCATGTGATCTGGGATCGGGCGGCTTGCGG ACGGGACTGTGAGAACAAAA
Downstream 100 bases:
>100_bases CCCCACGGCCCCGTCGCTAGGGCGGGGCCGGGATCGCGATCAGAGCATCATCTGATCGGATGGAGTGCTCAGTGCTGGGC TTCGAGCCGGTGGATCCGGT
Product: polypeptide-transport-associated domain-containing protein
Products: NA
Alternate protein names: Hemolysin Activation/Secretion Protein; Activation/Secretion Signal Peptide Protein; OMP85 Family Outer Membrane Protein; Hemolysin Activation/Secretion Protein-Like; Surface Antigen Variable Number Repeat Family Protein; Signal Peptide; Hemolysin Activation/Secretion Protein-Like Protein; Polypeptide-Transport-Associated Domain Protein ShlB-Type; ShlB-Type Family Protein; Secreted Protein Related Heme Utilisation; Exported Heme Utilisation Related Protein
Number of amino acids: Translated: 560; Mature: 559
Protein sequence:
>560_residues MTGTFGARRGTRGAVGLGVPAILLLAGLAPAARAQLAPHIINQNELGQSVRLPNLAKEQVPKQKPPTPSVSGISPFVLRG VRVEGATTLPPAAVAATWRGMVGHRVGSAQLSAILIAIGRLCQHQGLALYSVSLPQQNFAGGQVVVRVIEGHVGAVTIEG NTKGASLGLLKHYAARIVADQPLHRATLERNLLLMQSIPGLKVGSELRPMPGQPGVVRLLLGIHRRTVEAGVDVNNAGDR QLDIVQGTANVTVNGLFRQGERDQLVFGAPARIRRYQYYGIVHQEPIGTNGTTVTVTMGELITHPVGAINSGTAQIASVR LSDPLIYTQTRQLDASVEADYLNSNEALLGQTAVSERTRTLREGLIFARAGDWNGIDSGSFTVSEGINALGARRGSLAYG GPGFTKFDVSLVRLQALPKSFFLTVRANAQYALNHLPGSEQFLFGGSEFGRAYPAAVMAGDSGIEMSAELSHKLPLLQHV APKLISGLAAFGYADWGRIWNRQTIYQYPVDTGASAGGGVRMLLLRHFELTLGAGNELVKPREAAKLERWRFLFAVSGRF
Sequences:
>Translated_560_residues MTGTFGARRGTRGAVGLGVPAILLLAGLAPAARAQLAPHIINQNELGQSVRLPNLAKEQVPKQKPPTPSVSGISPFVLRG VRVEGATTLPPAAVAATWRGMVGHRVGSAQLSAILIAIGRLCQHQGLALYSVSLPQQNFAGGQVVVRVIEGHVGAVTIEG NTKGASLGLLKHYAARIVADQPLHRATLERNLLLMQSIPGLKVGSELRPMPGQPGVVRLLLGIHRRTVEAGVDVNNAGDR QLDIVQGTANVTVNGLFRQGERDQLVFGAPARIRRYQYYGIVHQEPIGTNGTTVTVTMGELITHPVGAINSGTAQIASVR LSDPLIYTQTRQLDASVEADYLNSNEALLGQTAVSERTRTLREGLIFARAGDWNGIDSGSFTVSEGINALGARRGSLAYG GPGFTKFDVSLVRLQALPKSFFLTVRANAQYALNHLPGSEQFLFGGSEFGRAYPAAVMAGDSGIEMSAELSHKLPLLQHV APKLISGLAAFGYADWGRIWNRQTIYQYPVDTGASAGGGVRMLLLRHFELTLGAGNELVKPREAAKLERWRFLFAVSGRF >Mature_559_residues TGTFGARRGTRGAVGLGVPAILLLAGLAPAARAQLAPHIINQNELGQSVRLPNLAKEQVPKQKPPTPSVSGISPFVLRGV RVEGATTLPPAAVAATWRGMVGHRVGSAQLSAILIAIGRLCQHQGLALYSVSLPQQNFAGGQVVVRVIEGHVGAVTIEGN TKGASLGLLKHYAARIVADQPLHRATLERNLLLMQSIPGLKVGSELRPMPGQPGVVRLLLGIHRRTVEAGVDVNNAGDRQ LDIVQGTANVTVNGLFRQGERDQLVFGAPARIRRYQYYGIVHQEPIGTNGTTVTVTMGELITHPVGAINSGTAQIASVRL SDPLIYTQTRQLDASVEADYLNSNEALLGQTAVSERTRTLREGLIFARAGDWNGIDSGSFTVSEGINALGARRGSLAYGG PGFTKFDVSLVRLQALPKSFFLTVRANAQYALNHLPGSEQFLFGGSEFGRAYPAAVMAGDSGIEMSAELSHKLPLLQHVA PKLISGLAAFGYADWGRIWNRQTIYQYPVDTGASAGGGVRMLLLRHFELTLGAGNELVKPREAAKLERWRFLFAVSGRF
Specific function: Unknown
COG id: COG2831
COG function: function code U; Hemolysin activation/secretion protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59744; Mature: 59612
Theoretical pI: Translated: 10.60; Mature: 10.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGTFGARRGTRGAVGLGVPAILLLAGLAPAARAQLAPHIINQNELGQSVRLPNLAKEQV CCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCHHHCCHHHCCCCCCCCCCHHHHC PKQKPPTPSVSGISPFVLRGVRVEGATTLPPAAVAATWRGMVGHRVGSAQLSAILIAIGR CCCCCCCCCCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LCQHQGLALYSVSLPQQNFAGGQVVVRVIEGHVGAVTIEGNTKGASLGLLKHYAARIVAD HHHHCCCEEEEEECCCCCCCCHHEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHCC QPLHRATLERNLLLMQSIPGLKVGSELRPMPGQPGVVRLLLGIHRRTVEAGVDVNNAGDR CCHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC QLDIVQGTANVTVNGLFRQGERDQLVFGAPARIRRYQYYGIVHQEPIGTNGTTVTVTMGE EEEEEECCCCEEEEEEECCCCCCCEEECCCHHHEEEEEEEEEECCCCCCCCCEEEEEHHH LITHPVGAINSGTAQIASVRLSDPLIYTQTRQLDASVEADYLNSNEALLGQTAVSERTRT HHHCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHH LREGLIFARAGDWNGIDSGSFTVSEGINALGARRGSLAYGGPGFTKFDVSLVRLQALPKS HHHCEEEEECCCCCCCCCCCEEHHHCHHHHHCCCCCCEECCCCCCHHHHHHHHHHHCCCE FFLTVRANAQYALNHLPGSEQFLFGGSEFGRAYPAAVMAGDSGIEMSAELSHKLPLLQHV EEEEEECCCEEEECCCCCCCEEEECCHHHCCCCCCEEEECCCCCEECHHHHHCCHHHHHH APKLISGLAAFGYADWGRIWNRQTIYQYPVDTGASAGGGVRMLLLRHFELTLGAGNELVK HHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCCCCCHHEEEHHHHEEEECCCCCCCC PREAAKLERWRFLFAVSGRF CHHHHHHHHEEEEEEECCCC >Mature Secondary Structure TGTFGARRGTRGAVGLGVPAILLLAGLAPAARAQLAPHIINQNELGQSVRLPNLAKEQV CCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCHHHCCHHHCCCCCCCCCCHHHHC PKQKPPTPSVSGISPFVLRGVRVEGATTLPPAAVAATWRGMVGHRVGSAQLSAILIAIGR CCCCCCCCCCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LCQHQGLALYSVSLPQQNFAGGQVVVRVIEGHVGAVTIEGNTKGASLGLLKHYAARIVAD HHHHCCCEEEEEECCCCCCCCHHEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHCC QPLHRATLERNLLLMQSIPGLKVGSELRPMPGQPGVVRLLLGIHRRTVEAGVDVNNAGDR CCHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC QLDIVQGTANVTVNGLFRQGERDQLVFGAPARIRRYQYYGIVHQEPIGTNGTTVTVTMGE EEEEEECCCCEEEEEEECCCCCCCEEECCCHHHEEEEEEEEEECCCCCCCCCEEEEEHHH LITHPVGAINSGTAQIASVRLSDPLIYTQTRQLDASVEADYLNSNEALLGQTAVSERTRT HHHCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHH LREGLIFARAGDWNGIDSGSFTVSEGINALGARRGSLAYGGPGFTKFDVSLVRLQALPKS HHHCEEEEECCCCCCCCCCCEEHHHCHHHHHCCCCCCEECCCCCCHHHHHHHHHHHCCCE FFLTVRANAQYALNHLPGSEQFLFGGSEFGRAYPAAVMAGDSGIEMSAELSHKLPLLQHV EEEEEECCCEEEECCCCCCCEEEECCHHHCCCCCCEEEECCCCCEECHHHHHCCHHHHHH APKLISGLAAFGYADWGRIWNRQTIYQYPVDTGASAGGGVRMLLLRHFELTLGAGNELVK HHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCCCCCHHEEEHHHHEEEECCCCCCCC PREAAKLERWRFLFAVSGRF CHHHHHHHHEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA