Definition Acidiphilium cryptum JF-5 chromosome, complete genome.
Accession NC_009484
Length 3,389,227

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The map label for this gene is 148260251

Identifier: 148260251

GI number: 148260251

Start: 1388995

End: 1390677

Strand: Reverse

Name: 148260251

Synonym: Acry_1248

Alternate gene names: NA

Gene position: 1390677-1388995 (Counterclockwise)

Preceding gene: 148260252

Following gene: 148260245

Centisome position: 41.03

GC content: 70.29

Gene sequence:

>1683_bases
ATGACGGGTACTTTCGGGGCGCGACGCGGGACCCGCGGCGCGGTGGGCCTTGGCGTGCCGGCGATACTGCTGCTGGCCGG
CCTGGCACCGGCGGCGCGGGCGCAGCTGGCGCCGCATATCATCAACCAGAACGAGCTCGGGCAGAGCGTGCGGCTGCCCA
ACCTGGCGAAGGAGCAGGTGCCGAAGCAGAAGCCGCCGACACCTTCGGTGTCGGGCATCTCGCCGTTCGTGCTGCGCGGG
GTGCGGGTCGAGGGCGCCACGACGCTGCCGCCCGCCGCGGTGGCGGCGACCTGGCGGGGGATGGTCGGGCATCGCGTCGG
CAGCGCGCAGCTTTCGGCGATCCTGATCGCGATCGGGCGGCTGTGCCAGCATCAGGGGCTGGCGCTCTATTCGGTGTCGC
TGCCGCAGCAGAACTTCGCCGGCGGCCAGGTGGTCGTGCGGGTGATCGAGGGGCATGTCGGCGCGGTCACGATCGAGGGC
AACACGAAGGGCGCGAGCCTCGGGCTGCTGAAGCATTACGCGGCGCGGATCGTCGCGGACCAGCCGCTGCACCGGGCGAC
GCTGGAGCGAAACCTGCTGCTGATGCAGTCGATTCCCGGCCTCAAGGTGGGCAGCGAGCTGCGGCCGATGCCGGGGCAGC
CCGGGGTCGTGCGGCTGCTGCTGGGGATTCATCGCCGGACGGTGGAGGCGGGGGTCGACGTGAACAATGCCGGCGACCGC
CAGCTCGACATCGTGCAGGGCACGGCGAACGTGACGGTGAACGGGCTGTTCCGCCAGGGCGAGCGCGACCAGCTGGTGTT
CGGCGCGCCGGCGAGGATCCGCCGCTACCAGTATTACGGGATCGTGCATCAGGAGCCGATCGGGACCAACGGGACGACCG
TGACCGTCACGATGGGCGAGCTGATCACCCATCCGGTCGGGGCGATCAATTCGGGGACGGCGCAGATCGCGAGCGTGCGG
CTGTCCGACCCGCTGATCTATACGCAGACCCGGCAGCTCGATGCCTCGGTGGAGGCGGACTACCTGAACAGCAACGAGGC
GCTGCTCGGGCAGACGGCGGTCTCGGAGCGGACGCGGACGCTGCGGGAAGGGCTGATCTTCGCGCGGGCGGGGGACTGGA
ACGGGATCGACAGCGGGTCGTTCACGGTGAGCGAGGGGATCAACGCGCTGGGGGCGCGGCGCGGCAGCCTCGCCTATGGC
GGGCCGGGCTTCACCAAGTTCGACGTGAGCCTGGTGCGGCTGCAGGCGCTGCCGAAATCGTTCTTCCTCACCGTGCGGGC
CAACGCCCAGTACGCGCTGAACCATCTGCCGGGGAGCGAGCAGTTCCTGTTCGGCGGCAGCGAGTTCGGCCGGGCCTATC
CGGCGGCGGTGATGGCGGGCGATAGCGGTATCGAGATGTCCGCCGAGCTGAGCCACAAGCTGCCCTTGCTCCAGCACGTC
GCGCCGAAGCTGATCTCGGGGCTGGCGGCGTTCGGCTATGCCGACTGGGGCCGGATCTGGAACCGGCAGACGATCTACCA
GTATCCGGTGGATACCGGCGCATCGGCCGGCGGGGGCGTGCGGATGCTGCTGCTGCGCCATTTCGAGCTGACGCTCGGCG
CCGGCAACGAGCTGGTGAAGCCGCGCGAGGCGGCGAAGCTGGAGCGCTGGCGCTTCCTCTTCGCCGTCTCGGGCCGGTTC
TGA

Upstream 100 bases:

>100_bases
TCTAAGTCTGGAAGAGGGCGGCGGCGCAAGCTGCCGCCCTTGCTGTCTCTGCATGTGATCTGGGATCGGGCGGCTTGCGG
ACGGGACTGTGAGAACAAAA

Downstream 100 bases:

>100_bases
CCCCACGGCCCCGTCGCTAGGGCGGGGCCGGGATCGCGATCAGAGCATCATCTGATCGGATGGAGTGCTCAGTGCTGGGC
TTCGAGCCGGTGGATCCGGT

Product: polypeptide-transport-associated domain-containing protein

Products: NA

Alternate protein names: Hemolysin Activation/Secretion Protein; Activation/Secretion Signal Peptide Protein; OMP85 Family Outer Membrane Protein; Hemolysin Activation/Secretion Protein-Like; Surface Antigen Variable Number Repeat Family Protein; Signal Peptide; Hemolysin Activation/Secretion Protein-Like Protein; Polypeptide-Transport-Associated Domain Protein ShlB-Type; ShlB-Type Family Protein; Secreted Protein Related Heme Utilisation; Exported Heme Utilisation Related Protein

Number of amino acids: Translated: 560; Mature: 559

Protein sequence:

>560_residues
MTGTFGARRGTRGAVGLGVPAILLLAGLAPAARAQLAPHIINQNELGQSVRLPNLAKEQVPKQKPPTPSVSGISPFVLRG
VRVEGATTLPPAAVAATWRGMVGHRVGSAQLSAILIAIGRLCQHQGLALYSVSLPQQNFAGGQVVVRVIEGHVGAVTIEG
NTKGASLGLLKHYAARIVADQPLHRATLERNLLLMQSIPGLKVGSELRPMPGQPGVVRLLLGIHRRTVEAGVDVNNAGDR
QLDIVQGTANVTVNGLFRQGERDQLVFGAPARIRRYQYYGIVHQEPIGTNGTTVTVTMGELITHPVGAINSGTAQIASVR
LSDPLIYTQTRQLDASVEADYLNSNEALLGQTAVSERTRTLREGLIFARAGDWNGIDSGSFTVSEGINALGARRGSLAYG
GPGFTKFDVSLVRLQALPKSFFLTVRANAQYALNHLPGSEQFLFGGSEFGRAYPAAVMAGDSGIEMSAELSHKLPLLQHV
APKLISGLAAFGYADWGRIWNRQTIYQYPVDTGASAGGGVRMLLLRHFELTLGAGNELVKPREAAKLERWRFLFAVSGRF

Sequences:

>Translated_560_residues
MTGTFGARRGTRGAVGLGVPAILLLAGLAPAARAQLAPHIINQNELGQSVRLPNLAKEQVPKQKPPTPSVSGISPFVLRG
VRVEGATTLPPAAVAATWRGMVGHRVGSAQLSAILIAIGRLCQHQGLALYSVSLPQQNFAGGQVVVRVIEGHVGAVTIEG
NTKGASLGLLKHYAARIVADQPLHRATLERNLLLMQSIPGLKVGSELRPMPGQPGVVRLLLGIHRRTVEAGVDVNNAGDR
QLDIVQGTANVTVNGLFRQGERDQLVFGAPARIRRYQYYGIVHQEPIGTNGTTVTVTMGELITHPVGAINSGTAQIASVR
LSDPLIYTQTRQLDASVEADYLNSNEALLGQTAVSERTRTLREGLIFARAGDWNGIDSGSFTVSEGINALGARRGSLAYG
GPGFTKFDVSLVRLQALPKSFFLTVRANAQYALNHLPGSEQFLFGGSEFGRAYPAAVMAGDSGIEMSAELSHKLPLLQHV
APKLISGLAAFGYADWGRIWNRQTIYQYPVDTGASAGGGVRMLLLRHFELTLGAGNELVKPREAAKLERWRFLFAVSGRF
>Mature_559_residues
TGTFGARRGTRGAVGLGVPAILLLAGLAPAARAQLAPHIINQNELGQSVRLPNLAKEQVPKQKPPTPSVSGISPFVLRGV
RVEGATTLPPAAVAATWRGMVGHRVGSAQLSAILIAIGRLCQHQGLALYSVSLPQQNFAGGQVVVRVIEGHVGAVTIEGN
TKGASLGLLKHYAARIVADQPLHRATLERNLLLMQSIPGLKVGSELRPMPGQPGVVRLLLGIHRRTVEAGVDVNNAGDRQ
LDIVQGTANVTVNGLFRQGERDQLVFGAPARIRRYQYYGIVHQEPIGTNGTTVTVTMGELITHPVGAINSGTAQIASVRL
SDPLIYTQTRQLDASVEADYLNSNEALLGQTAVSERTRTLREGLIFARAGDWNGIDSGSFTVSEGINALGARRGSLAYGG
PGFTKFDVSLVRLQALPKSFFLTVRANAQYALNHLPGSEQFLFGGSEFGRAYPAAVMAGDSGIEMSAELSHKLPLLQHVA
PKLISGLAAFGYADWGRIWNRQTIYQYPVDTGASAGGGVRMLLLRHFELTLGAGNELVKPREAAKLERWRFLFAVSGRF

Specific function: Unknown

COG id: COG2831

COG function: function code U; Hemolysin activation/secretion protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59744; Mature: 59612

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGTFGARRGTRGAVGLGVPAILLLAGLAPAARAQLAPHIINQNELGQSVRLPNLAKEQV
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCHHHCCHHHCCCCCCCCCCHHHHC
PKQKPPTPSVSGISPFVLRGVRVEGATTLPPAAVAATWRGMVGHRVGSAQLSAILIAIGR
CCCCCCCCCCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LCQHQGLALYSVSLPQQNFAGGQVVVRVIEGHVGAVTIEGNTKGASLGLLKHYAARIVAD
HHHHCCCEEEEEECCCCCCCCHHEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
QPLHRATLERNLLLMQSIPGLKVGSELRPMPGQPGVVRLLLGIHRRTVEAGVDVNNAGDR
CCHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
QLDIVQGTANVTVNGLFRQGERDQLVFGAPARIRRYQYYGIVHQEPIGTNGTTVTVTMGE
EEEEEECCCCEEEEEEECCCCCCCEEECCCHHHEEEEEEEEEECCCCCCCCCEEEEEHHH
LITHPVGAINSGTAQIASVRLSDPLIYTQTRQLDASVEADYLNSNEALLGQTAVSERTRT
HHHCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHH
LREGLIFARAGDWNGIDSGSFTVSEGINALGARRGSLAYGGPGFTKFDVSLVRLQALPKS
HHHCEEEEECCCCCCCCCCCEEHHHCHHHHHCCCCCCEECCCCCCHHHHHHHHHHHCCCE
FFLTVRANAQYALNHLPGSEQFLFGGSEFGRAYPAAVMAGDSGIEMSAELSHKLPLLQHV
EEEEEECCCEEEECCCCCCCEEEECCHHHCCCCCCEEEECCCCCEECHHHHHCCHHHHHH
APKLISGLAAFGYADWGRIWNRQTIYQYPVDTGASAGGGVRMLLLRHFELTLGAGNELVK
HHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCCCCCHHEEEHHHHEEEECCCCCCCC
PREAAKLERWRFLFAVSGRF
CHHHHHHHHEEEEEEECCCC
>Mature Secondary Structure 
TGTFGARRGTRGAVGLGVPAILLLAGLAPAARAQLAPHIINQNELGQSVRLPNLAKEQV
CCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCHHHCCHHHCCCCCCCCCCHHHHC
PKQKPPTPSVSGISPFVLRGVRVEGATTLPPAAVAATWRGMVGHRVGSAQLSAILIAIGR
CCCCCCCCCCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LCQHQGLALYSVSLPQQNFAGGQVVVRVIEGHVGAVTIEGNTKGASLGLLKHYAARIVAD
HHHHCCCEEEEEECCCCCCCCHHEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
QPLHRATLERNLLLMQSIPGLKVGSELRPMPGQPGVVRLLLGIHRRTVEAGVDVNNAGDR
CCHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
QLDIVQGTANVTVNGLFRQGERDQLVFGAPARIRRYQYYGIVHQEPIGTNGTTVTVTMGE
EEEEEECCCCEEEEEEECCCCCCCEEECCCHHHEEEEEEEEEECCCCCCCCCEEEEEHHH
LITHPVGAINSGTAQIASVRLSDPLIYTQTRQLDASVEADYLNSNEALLGQTAVSERTRT
HHHCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHH
LREGLIFARAGDWNGIDSGSFTVSEGINALGARRGSLAYGGPGFTKFDVSLVRLQALPKS
HHHCEEEEECCCCCCCCCCCEEHHHCHHHHHCCCCCCEECCCCCCHHHHHHHHHHHCCCE
FFLTVRANAQYALNHLPGSEQFLFGGSEFGRAYPAAVMAGDSGIEMSAELSHKLPLLQHV
EEEEEECCCEEEECCCCCCCEEEECCHHHCCCCCCEEEECCCCCEECHHHHHCCHHHHHH
APKLISGLAAFGYADWGRIWNRQTIYQYPVDTGASAGGGVRMLLLRHFELTLGAGNELVK
HHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCCCCCHHEEEHHHHEEEECCCCCCCC
PREAAKLERWRFLFAVSGRF
CHHHHHHHHEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA