| Definition | Acidiphilium cryptum JF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_009484 |
| Length | 3,389,227 |
Click here to switch to the map view.
The map label for this gene is yyaJ [H]
Identifier: 148260087
GI number: 148260087
Start: 1203515
End: 1204942
Strand: Reverse
Name: yyaJ [H]
Synonym: Acry_1080
Alternate gene names: 148260087
Gene position: 1204942-1203515 (Counterclockwise)
Preceding gene: 148260089
Following gene: 148260086
Centisome position: 35.55
GC content: 70.31
Gene sequence:
>1428_bases ATGACCGCCACCGACAATACCGCGGGGCTCCTGCTCGCGCGGCTCGACCGGATCCCGAACTGGACCCTGCCCAGGCTCTA CGCGCTGGTGATCGGCATCGGGTTTCTCTTCACCTTCTACGATATCTTCGACATCAACGTCTCCTTCATCCAGACCTGCA TGGCGCTGGTGCCGGGCTGCACGCCGGCGAAATCGGGCGCCTATATCGGCCTGCCGGTGCTGCTCAATCTCGCCGGCTAC GTGGTCGGCACGCTGGTCCTCAGCCCGCTGGCCGACCGGATGGGGCGGCGCGACCTGCTGCTGGTGACGATGATCCTCAC CGGCATCGGCTCGGCGCTCACCGCCATCGTGCAGTCCTACGGCACCTTCGTCGCCGCGCGCGCCTTCACCGGCGTCGGCA TCGGCGCCGACCTCGCCATCGTCAACACCTATATCGGCGAACTCGCCCCGGCCGGCGGCCGCGCCCGCTACACCTCGATG ATCTTCATCTTCTCCGCCCTCGGCGCGGTGGCCGGCATCTGGCTCGGCCTCTGGCTGACCACGCCGCCCACGCCGCTGCC GCTCGGCCTGCCCTTCGCCCTCGCCGGCAAGGGTTTTCCGGATGGCTGGCGCGTGATGTATCTCATCGGCGCGGCCCTCG CGCTGGTCGGCGTGCTGCTGCGCTTCCAGCTGCCGGAATCGCCGCGCTGGCTCATCGCCCAGGGCCGCCTCGAGGAGGCC GGCCAGGTCGTCGCCGACATGGAGGCCCGCGCCCACGCGATCTTCCCGCTGCCGCCGCTGCCCGAGCGCCTGCCGCCCGC ACCAAGGCGCGAGGAGGCGATGCCCTTCAGCGCGATCTTCCGCAACGCCACCTACCGCAACCGCACGCTGCTGCTGACCG TGATGTGGTTCCTCGCCTACATCACGGTCTATTCCTTCGCCGCCGGCTTCACCACGCTGCTCGCCGCCCTGCATTACCCG CCGCCCGAGGCCGGGCTGATCACCGCGATGGGCACGTTCGGCTTCGTGCTCTGCGCCATCGTCGCCTATGTCTGGGGCGA GCGGATGGAGCGCCGGCGCTGGACGCCGCTGGCGGCCCTCATCACCCTCGGCGGCGGCGTGCTCATCGCGCTGGGCGGGC AGACGCTGTGGCTCTCGGTGATCGGCGCGATGATCGTCTTCTTCGGCTTCAACGTCTGGGTGCCGATCGCCTATGCCTGG TCGGTCGAGAACTACCCGACCCGCGCGCGCACCACCGGCTTCGCCCTGGTCGACGGCATCGGCCATCTCGGCGGCGGCGT CGGCATGATCGCGATCGCCCCGCTCATCCCGCGGCTCGGCGTCATGGCGGCGTTCCTGCTGATCGGCGGCTTCCTCGCGC TGGCGGCGCTGGTCGCCCAGTTCGGCATCAGCACCCGCGCCCGCCGGCTCGACGACATCTCGCCCTGA
Upstream 100 bases:
>100_bases GGCGCCCCGTGCCGCGCGGTTGACTTTCGTTTCACTTGCACTGCACCCTTTCCGCCGGCCCGGCGCAAGACCGGGCGCCC GATAAACACCGGGAGGAACC
Downstream 100 bases:
>100_bases CCTCGCGCCCCGAAATCCCGCCCCGAAATCCGGCGCGGACCAGCGGCGGAAGCCGGATCGCGCGACCGGCCCGCCCGCCG CGCCGCGCCGGCTTCCGCCA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 475; Mature: 474
Protein sequence:
>475_residues MTATDNTAGLLLARLDRIPNWTLPRLYALVIGIGFLFTFYDIFDINVSFIQTCMALVPGCTPAKSGAYIGLPVLLNLAGY VVGTLVLSPLADRMGRRDLLLVTMILTGIGSALTAIVQSYGTFVAARAFTGVGIGADLAIVNTYIGELAPAGGRARYTSM IFIFSALGAVAGIWLGLWLTTPPTPLPLGLPFALAGKGFPDGWRVMYLIGAALALVGVLLRFQLPESPRWLIAQGRLEEA GQVVADMEARAHAIFPLPPLPERLPPAPRREEAMPFSAIFRNATYRNRTLLLTVMWFLAYITVYSFAAGFTTLLAALHYP PPEAGLITAMGTFGFVLCAIVAYVWGERMERRRWTPLAALITLGGGVLIALGGQTLWLSVIGAMIVFFGFNVWVPIAYAW SVENYPTRARTTGFALVDGIGHLGGGVGMIAIAPLIPRLGVMAAFLLIGGFLALAALVAQFGISTRARRLDDISP
Sequences:
>Translated_475_residues MTATDNTAGLLLARLDRIPNWTLPRLYALVIGIGFLFTFYDIFDINVSFIQTCMALVPGCTPAKSGAYIGLPVLLNLAGY VVGTLVLSPLADRMGRRDLLLVTMILTGIGSALTAIVQSYGTFVAARAFTGVGIGADLAIVNTYIGELAPAGGRARYTSM IFIFSALGAVAGIWLGLWLTTPPTPLPLGLPFALAGKGFPDGWRVMYLIGAALALVGVLLRFQLPESPRWLIAQGRLEEA GQVVADMEARAHAIFPLPPLPERLPPAPRREEAMPFSAIFRNATYRNRTLLLTVMWFLAYITVYSFAAGFTTLLAALHYP PPEAGLITAMGTFGFVLCAIVAYVWGERMERRRWTPLAALITLGGGVLIALGGQTLWLSVIGAMIVFFGFNVWVPIAYAW SVENYPTRARTTGFALVDGIGHLGGGVGMIAIAPLIPRLGVMAAFLLIGGFLALAALVAQFGISTRARRLDDISP >Mature_474_residues TATDNTAGLLLARLDRIPNWTLPRLYALVIGIGFLFTFYDIFDINVSFIQTCMALVPGCTPAKSGAYIGLPVLLNLAGYV VGTLVLSPLADRMGRRDLLLVTMILTGIGSALTAIVQSYGTFVAARAFTGVGIGADLAIVNTYIGELAPAGGRARYTSMI FIFSALGAVAGIWLGLWLTTPPTPLPLGLPFALAGKGFPDGWRVMYLIGAALALVGVLLRFQLPESPRWLIAQGRLEEAG QVVADMEARAHAIFPLPPLPERLPPAPRREEAMPFSAIFRNATYRNRTLLLTVMWFLAYITVYSFAAGFTTLLAALHYPP PEAGLITAMGTFGFVLCAIVAYVWGERMERRRWTPLAALITLGGGVLIALGGQTLWLSVIGAMIVFFGFNVWVPIAYAWS VENYPTRARTTGFALVDGIGHLGGGVGMIAIAPLIPRLGVMAAFLLIGGFLALAALVAQFGISTRARRLDDISP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI216548223, Length=210, Percent_Identity=29.5238095238095, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI7662270, Length=284, Percent_Identity=26.7605633802817, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI262399383, Length=282, Percent_Identity=25.886524822695, Blast_Score=82, Evalue=8e-16, Organism=Homo sapiens, GI73695465, Length=298, Percent_Identity=24.8322147651007, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI166064021, Length=421, Percent_Identity=26.603325415677, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI4507005, Length=403, Percent_Identity=27.0471464019851, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI166197673, Length=382, Percent_Identity=25.130890052356, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI4506999, Length=354, Percent_Identity=24.8587570621469, Blast_Score=73, Evalue=8e-13, Organism=Homo sapiens, GI24497490, Length=399, Percent_Identity=26.8170426065163, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI302148518, Length=364, Percent_Identity=23.3516483516484, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI1788074, Length=452, Percent_Identity=23.4513274336283, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1786229, Length=421, Percent_Identity=26.3657957244656, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1788068, Length=477, Percent_Identity=24.3186582809224, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI87082159, Length=296, Percent_Identity=28.0405405405405, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790463, Length=266, Percent_Identity=25.187969924812, Blast_Score=62, Evalue=1e-10, Organism=Caenorhabditis elegans, GI71986689, Length=416, Percent_Identity=24.5192307692308, Blast_Score=72, Evalue=8e-13, Organism=Caenorhabditis elegans, GI193202825, Length=416, Percent_Identity=24.5192307692308, Blast_Score=71, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6320745, Length=357, Percent_Identity=23.249299719888, Blast_Score=67, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6323512, Length=504, Percent_Identity=23.2142857142857, Blast_Score=67, Evalue=7e-12, Organism=Drosophila melanogaster, GI221330907, Length=379, Percent_Identity=23.7467018469657, Blast_Score=66, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 50877; Mature: 50746
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: PS00178 AA_TRNA_LIGASE_I ; PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1 ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTATDNTAGLLLARLDRIPNWTLPRLYALVIGIGFLFTFYDIFDINVSFIQTCMALVPGC CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC TPAKSGAYIGLPVLLNLAGYVVGTLVLSPLADRMGRRDLLLVTMILTGIGSALTAIVQSY CCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH GTFVAARAFTGVGIGADLAIVNTYIGELAPAGGRARYTSMIFIFSALGAVAGIWLGLWLT HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC TPPTPLPLGLPFALAGKGFPDGWRVMYLIGAALALVGVLLRFQLPESPRWLIAQGRLEEA CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHH GQVVADMEARAHAIFPLPPLPERLPPAPRREEAMPFSAIFRNATYRNRTLLLTVMWFLAY HHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHH ITVYSFAAGFTTLLAALHYPPPEAGLITAMGTFGFVLCAIVAYVWGERMERRRWTPLAAL HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH ITLGGGVLIALGGQTLWLSVIGAMIVFFGFNVWVPIAYAWSVENYPTRARTTGFALVDGI HHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHCCHHHHHHH GHLGGGVGMIAIAPLIPRLGVMAAFLLIGGFLALAALVAQFGISTRARRLDDISP HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC >Mature Secondary Structure TATDNTAGLLLARLDRIPNWTLPRLYALVIGIGFLFTFYDIFDINVSFIQTCMALVPGC CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC TPAKSGAYIGLPVLLNLAGYVVGTLVLSPLADRMGRRDLLLVTMILTGIGSALTAIVQSY CCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH GTFVAARAFTGVGIGADLAIVNTYIGELAPAGGRARYTSMIFIFSALGAVAGIWLGLWLT HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC TPPTPLPLGLPFALAGKGFPDGWRVMYLIGAALALVGVLLRFQLPESPRWLIAQGRLEEA CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHH GQVVADMEARAHAIFPLPPLPERLPPAPRREEAMPFSAIFRNATYRNRTLLLTVMWFLAY HHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHH ITVYSFAAGFTTLLAALHYPPPEAGLITAMGTFGFVLCAIVAYVWGERMERRRWTPLAAL HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH ITLGGGVLIALGGQTLWLSVIGAMIVFFGFNVWVPIAYAWSVENYPTRARTTGFALVDGI HHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHCCHHHHHHH GHLGGGVGMIAIAPLIPRLGVMAAFLLIGGFLALAALVAQFGISTRARRLDDISP HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7584024; 8011666; 9384377 [H]