| Definition | Acidiphilium cryptum JF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_009484 |
| Length | 3,389,227 |
Click here to switch to the map view.
The map label for this gene is b2854 [C]
Identifier: 148259893
GI number: 148259893
Start: 974045
End: 974443
Strand: Reverse
Name: b2854 [C]
Synonym: Acry_0882
Alternate gene names: 148259893
Gene position: 974443-974045 (Counterclockwise)
Preceding gene: 148259895
Following gene: 148259892
Centisome position: 28.75
GC content: 63.16
Gene sequence:
>399_bases ATGACCTCGCTGTTGCGCTGCATGATTCTTGCAGCTTCGGTCTATCATCTTCCGCCTCGCGTCCTGCCGGTGATCGCGCG GATCGAGGGGGGACATGTCGGGCTCGTTCGCCCGGATTCCAATGGCACCGCGGATTATGGGCCGATGCAGGTGAACAGTG TCTGGCTCGATACGATCGCCCGCCGGGCACGGCTTGGCGCGCGCGAAACGCGACGACGCCTGATCGACGATCCGTGTTTC AATATTGCCGCCGCCGCCTTCATCCTGCGCACTGACATCGACCGCGCGGGCAACCTTATGCAGGGCATCGGCGACTACCA TTCGGCCACGCCGCGCTTGAACGCCGCCTATCGGGCGCGGGCAATAACGATGGCACAACGGATGTTCGGTCCGCGTTAA
Upstream 100 bases:
>100_bases CGTTCTGCCTTTGCGTTCATGAACGCGTGAGTATCCGAGAGGGTGGCGCAAGCGCCAGCGACGGCGGCGCGCACGATGAC GATTTCACGGAGATATCACG
Downstream 100 bases:
>100_bases TTTCACATTCTTGCAACGGAACTATCACGAAATCGGGAAATTTGATCTGTATATATCCGCGCGAGGTAAACATTTCGTGT GGAGCGAATTATGAAACGAG
Product: lytic transglycosylase
Products: NA
Alternate protein names: BfpH Protein; Lytic Transglycosylase; Conjugal Transfer Protein TrbN; Lytic Murein Transglycosylase; TrbN Protein; Conjugal Muramidase TrbN/BfpH; Invasion Family Protein; Type IV Pili; Lipoprotein
Number of amino acids: Translated: 132; Mature: 131
Protein sequence:
>132_residues MTSLLRCMILAASVYHLPPRVLPVIARIEGGHVGLVRPDSNGTADYGPMQVNSVWLDTIARRARLGARETRRRLIDDPCF NIAAAAFILRTDIDRAGNLMQGIGDYHSATPRLNAAYRARAITMAQRMFGPR
Sequences:
>Translated_132_residues MTSLLRCMILAASVYHLPPRVLPVIARIEGGHVGLVRPDSNGTADYGPMQVNSVWLDTIARRARLGARETRRRLIDDPCF NIAAAAFILRTDIDRAGNLMQGIGDYHSATPRLNAAYRARAITMAQRMFGPR >Mature_131_residues TSLLRCMILAASVYHLPPRVLPVIARIEGGHVGLVRPDSNGTADYGPMQVNSVWLDTIARRARLGARETRRRLIDDPCFN IAAAAFILRTDIDRAGNLMQGIGDYHSATPRLNAAYRARAITMAQRMFGPR
Specific function: Unknown
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14602; Mature: 14471
Theoretical pI: Translated: 11.36; Mature: 11.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLLRCMILAASVYHLPPRVLPVIARIEGGHVGLVRPDSNGTADYGPMQVNSVWLDTIA CHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHH RRARLGARETRRRLIDDPCFNIAAAAFILRTDIDRAGNLMQGIGDYHSATPRLNAAYRAR HHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH AITMAQRMFGPR HHHHHHHHCCCC >Mature Secondary Structure TSLLRCMILAASVYHLPPRVLPVIARIEGGHVGLVRPDSNGTADYGPMQVNSVWLDTIA HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHH RRARLGARETRRRLIDDPCFNIAAAAFILRTDIDRAGNLMQGIGDYHSATPRLNAAYRAR HHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH AITMAQRMFGPR HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA