Definition Acidiphilium cryptum JF-5 chromosome, complete genome.
Accession NC_009484
Length 3,389,227

Click here to switch to the map view.

The map label for this gene is 148259845

Identifier: 148259845

GI number: 148259845

Start: 922109

End: 923119

Strand: Reverse

Name: 148259845

Synonym: Acry_0834

Alternate gene names: NA

Gene position: 923119-922109 (Counterclockwise)

Preceding gene: 148259847

Following gene: 148259844

Centisome position: 27.24

GC content: 63.8

Gene sequence:

>1011_bases
ATGGACTGGTTTCGCTCCTTGCCTCGACTGCTTGCCGCGCTGCTCTGCATATCACCGGCGCTGGCCCATGCCGCATCGCC
GCCGAAGCTGCAAAAGGTCACGTTCGGGCTCGACTGGGTGGCCGAGGCCGAATATGGCGGCTTCTATCAGGCGGTGGCGG
ACGGCATCTACCGCAAATATGGCCTCGACGTGACGATCCGCGAGGGCGGGCCGCAGGTGAACAACGCGCAGCTGCTGCTC
GCCGGGCGGCTCGATTTCGACATCACCTCGAACAGCTTCCTCGCCTTCAATTTCGTGCAGCAGAAGATTCCCTTCGTCGC
GGTCGCCGCGTTCTTCCAGAAGGATATCGACGTGCTGATCGCCCATCGCGGTGCCGGCGAGGACAGTTTCGCCGCGCTGA
AGGGCAAGCCGATCGCGATTTCGGCGGATACGCGGGCGGGCTGGTGGCTCTTCCTGAAGAAGAAATACGGCTACAGCGAT
AGCCAGATCCGCCCCTACGATTTCAGCCTCGCCCCGTTCTTCACCAGCAAGGACCTGGTGGTGCAGGGATTTCTGACCTC
GGAGCCGTTCCTCGTGAAGCAGAAGACCGGGCATTTCCCGGTGGTGCTGCGGCTCGACCAGGCGGGGTTCGACGGGTATG
GCGAGCTGATCGCGACCTCGCGCAAGCTGGCGAAGACCGACCCTTCGGTGGTGCGCCGCTTCATCGAGGCGTCGGCCGAG
GGGTGGAAATCCTATCTCGACGGCAATCCGGCGCCCGCCTTCGCGCTGATCCGCAAGGCCAATCCGGACATGACGCCGGC
GCTGCTGAAATTCGGCTATGACCAGCTCAAGGCGCATCAGGTGGTGGAGGATGCCACCACGGCGAAGATCGGGATCGGCG
GGATGACCGATGCGCGGTGGAAAGGCTTCTACGAGCAGATGCGCGCGGCCGGCCTGTATCCGGCGCATTTCGACTATCGC
AAGGCCTATACGTTGCGGTTCCTGCCGAAGGGGAAAGCGGCCGCGCGCTGA

Upstream 100 bases:

>100_bases
TGCCGGCCTTGACGCGGGGTTCGCTCACCGGGCTTGACCTATCGACGACCGCACCGAACTCTGTTGATAATGACTAACGA
AAACCGACGGGGATAAGCTC

Downstream 100 bases:

>100_bases
GATGGTGCGGCTGGAACAGGTGACGCGGCGGTTCGGGGCGGGGACGGTCGCGCTCGCCGGGATCGACGCGGCGATCGGGC
GGGGCGAGTTCGTCGCCCTG

Product: ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein

Products: NA

Alternate protein names: NMT1/THI5-Like Domain-Containing Protein; Diguanylate Cyclase; NMT1/THI5 Like Domain-Containing Protein; Histidine Kinase; NMT1/THI5 Like Family; Permease Protein Of ABC Transporter; Secreted Protein; GGDEF Domain-Containing Protein; Nitrate/Sulfonate/Bicarbonate ABC Transporter; PAS Sensor Protein; PAS/PAC Sensor-Containg Diguanylate Cyclase; Twin-Arginine Translocation Pathway Signal; NMT1/THI5-Like Protein; Diguanylate Cyclase/Phosphodiesterase; Nitrate/Sulfonate/Bicarbonate ABC Transporter Permease; Diguanylate Cyclase With PAS/PAC Sensor; ABC Transporter Permease; PAS/GGDEF Domain-Containing Protein; Signal Transduction Response Regulator; PAS/PAC Sensor Signal Transduction Histidine Kinase; Two-Component Sensor Histidine Kinase; ABC Transporter; Diguanylate Cyclase With Extracellular Sensor; Two-Component Sensor Protein; PasGgdef; PAS/PAC Sensor Hybrid Histidine Kinase; Two Domain Sensory Box Histidine Kinase; Signal Transduction Protein; Diguanylate Cyclase Domain Protein; Sensory Transduction Histidine Kinase; Pyrimidine Biosynthesis; NMT1/THI5-Ike Domain-Containing Protein; Membrane Lipoprotein Lipid Attachment Site; ABC-Type Transporter Periplasmic Component; PAS/PAC Sensor-Containing Diguanylate Cyclase; Lipoprotein; Exported Protein; Multi-Sensor Signal Transduction Histidine Kinase

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MDWFRSLPRLLAALLCISPALAHAASPPKLQKVTFGLDWVAEAEYGGFYQAVADGIYRKYGLDVTIREGGPQVNNAQLLL
AGRLDFDITSNSFLAFNFVQQKIPFVAVAAFFQKDIDVLIAHRGAGEDSFAALKGKPIAISADTRAGWWLFLKKKYGYSD
SQIRPYDFSLAPFFTSKDLVVQGFLTSEPFLVKQKTGHFPVVLRLDQAGFDGYGELIATSRKLAKTDPSVVRRFIEASAE
GWKSYLDGNPAPAFALIRKANPDMTPALLKFGYDQLKAHQVVEDATTAKIGIGGMTDARWKGFYEQMRAAGLYPAHFDYR
KAYTLRFLPKGKAAAR

Sequences:

>Translated_336_residues
MDWFRSLPRLLAALLCISPALAHAASPPKLQKVTFGLDWVAEAEYGGFYQAVADGIYRKYGLDVTIREGGPQVNNAQLLL
AGRLDFDITSNSFLAFNFVQQKIPFVAVAAFFQKDIDVLIAHRGAGEDSFAALKGKPIAISADTRAGWWLFLKKKYGYSD
SQIRPYDFSLAPFFTSKDLVVQGFLTSEPFLVKQKTGHFPVVLRLDQAGFDGYGELIATSRKLAKTDPSVVRRFIEASAE
GWKSYLDGNPAPAFALIRKANPDMTPALLKFGYDQLKAHQVVEDATTAKIGIGGMTDARWKGFYEQMRAAGLYPAHFDYR
KAYTLRFLPKGKAAAR
>Mature_336_residues
MDWFRSLPRLLAALLCISPALAHAASPPKLQKVTFGLDWVAEAEYGGFYQAVADGIYRKYGLDVTIREGGPQVNNAQLLL
AGRLDFDITSNSFLAFNFVQQKIPFVAVAAFFQKDIDVLIAHRGAGEDSFAALKGKPIAISADTRAGWWLFLKKKYGYSD
SQIRPYDFSLAPFFTSKDLVVQGFLTSEPFLVKQKTGHFPVVLRLDQAGFDGYGELIATSRKLAKTDPSVVRRFIEASAE
GWKSYLDGNPAPAFALIRKANPDMTPALLKFGYDQLKAHQVVEDATTAKIGIGGMTDARWKGFYEQMRAAGLYPAHFDYR
KAYTLRFLPKGKAAAR

Specific function: Unknown

COG id: COG0715

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37227; Mature: 37227

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWFRSLPRLLAALLCISPALAHAASPPKLQKVTFGLDWVAEAEYGGFYQAVADGIYRKY
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHH
GLDVTIREGGPQVNNAQLLLAGRLDFDITSNSFLAFNFVQQKIPFVAVAAFFQKDIDVLI
CCEEEEECCCCCCCCCEEEEEECEEEEECCCCEEEEEHHHHHCCHHHHHHHHHHCCEEEE
AHRGAGEDSFAALKGKPIAISADTRAGWWLFLKKKYGYSDSQIRPYDFSLAPFFTSKDLV
EECCCCCCCHHHHCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEECCCCCCCCEE
VQGFLTSEPFLVKQKTGHFPVVLRLDQAGFDGYGELIATSRKLAKTDPSVVRRFIEASAE
EEEEECCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
GWKSYLDGNPAPAFALIRKANPDMTPALLKFGYDQLKAHQVVEDATTAKIGIGGMTDARW
HHHHHHCCCCCCHHHEEECCCCCCCHHHHHHCHHHHHHHHHHHHCCCEEEECCCCCCHHH
KGFYEQMRAAGLYPAHFDYRKAYTLRFLPKGKAAAR
HHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure
MDWFRSLPRLLAALLCISPALAHAASPPKLQKVTFGLDWVAEAEYGGFYQAVADGIYRKY
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHH
GLDVTIREGGPQVNNAQLLLAGRLDFDITSNSFLAFNFVQQKIPFVAVAAFFQKDIDVLI
CCEEEEECCCCCCCCCEEEEEECEEEEECCCCEEEEEHHHHHCCHHHHHHHHHHCCEEEE
AHRGAGEDSFAALKGKPIAISADTRAGWWLFLKKKYGYSDSQIRPYDFSLAPFFTSKDLV
EECCCCCCCHHHHCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEECCCCCCCCEE
VQGFLTSEPFLVKQKTGHFPVVLRLDQAGFDGYGELIATSRKLAKTDPSVVRRFIEASAE
EEEEECCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
GWKSYLDGNPAPAFALIRKANPDMTPALLKFGYDQLKAHQVVEDATTAKIGIGGMTDARW
HHHHHHCCCCCCHHHEEECCCCCCCHHHHHHCHHHHHHHHHHHHCCCEEEECCCCCCHHH
KGFYEQMRAAGLYPAHFDYRKAYTLRFLPKGKAAAR
HHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA