| Definition | Acidiphilium cryptum JF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_009484 |
| Length | 3,389,227 |
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The map label for this gene is 148259845
Identifier: 148259845
GI number: 148259845
Start: 922109
End: 923119
Strand: Reverse
Name: 148259845
Synonym: Acry_0834
Alternate gene names: NA
Gene position: 923119-922109 (Counterclockwise)
Preceding gene: 148259847
Following gene: 148259844
Centisome position: 27.24
GC content: 63.8
Gene sequence:
>1011_bases ATGGACTGGTTTCGCTCCTTGCCTCGACTGCTTGCCGCGCTGCTCTGCATATCACCGGCGCTGGCCCATGCCGCATCGCC GCCGAAGCTGCAAAAGGTCACGTTCGGGCTCGACTGGGTGGCCGAGGCCGAATATGGCGGCTTCTATCAGGCGGTGGCGG ACGGCATCTACCGCAAATATGGCCTCGACGTGACGATCCGCGAGGGCGGGCCGCAGGTGAACAACGCGCAGCTGCTGCTC GCCGGGCGGCTCGATTTCGACATCACCTCGAACAGCTTCCTCGCCTTCAATTTCGTGCAGCAGAAGATTCCCTTCGTCGC GGTCGCCGCGTTCTTCCAGAAGGATATCGACGTGCTGATCGCCCATCGCGGTGCCGGCGAGGACAGTTTCGCCGCGCTGA AGGGCAAGCCGATCGCGATTTCGGCGGATACGCGGGCGGGCTGGTGGCTCTTCCTGAAGAAGAAATACGGCTACAGCGAT AGCCAGATCCGCCCCTACGATTTCAGCCTCGCCCCGTTCTTCACCAGCAAGGACCTGGTGGTGCAGGGATTTCTGACCTC GGAGCCGTTCCTCGTGAAGCAGAAGACCGGGCATTTCCCGGTGGTGCTGCGGCTCGACCAGGCGGGGTTCGACGGGTATG GCGAGCTGATCGCGACCTCGCGCAAGCTGGCGAAGACCGACCCTTCGGTGGTGCGCCGCTTCATCGAGGCGTCGGCCGAG GGGTGGAAATCCTATCTCGACGGCAATCCGGCGCCCGCCTTCGCGCTGATCCGCAAGGCCAATCCGGACATGACGCCGGC GCTGCTGAAATTCGGCTATGACCAGCTCAAGGCGCATCAGGTGGTGGAGGATGCCACCACGGCGAAGATCGGGATCGGCG GGATGACCGATGCGCGGTGGAAAGGCTTCTACGAGCAGATGCGCGCGGCCGGCCTGTATCCGGCGCATTTCGACTATCGC AAGGCCTATACGTTGCGGTTCCTGCCGAAGGGGAAAGCGGCCGCGCGCTGA
Upstream 100 bases:
>100_bases TGCCGGCCTTGACGCGGGGTTCGCTCACCGGGCTTGACCTATCGACGACCGCACCGAACTCTGTTGATAATGACTAACGA AAACCGACGGGGATAAGCTC
Downstream 100 bases:
>100_bases GATGGTGCGGCTGGAACAGGTGACGCGGCGGTTCGGGGCGGGGACGGTCGCGCTCGCCGGGATCGACGCGGCGATCGGGC GGGGCGAGTTCGTCGCCCTG
Product: ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
Products: NA
Alternate protein names: NMT1/THI5-Like Domain-Containing Protein; Diguanylate Cyclase; NMT1/THI5 Like Domain-Containing Protein; Histidine Kinase; NMT1/THI5 Like Family; Permease Protein Of ABC Transporter; Secreted Protein; GGDEF Domain-Containing Protein; Nitrate/Sulfonate/Bicarbonate ABC Transporter; PAS Sensor Protein; PAS/PAC Sensor-Containg Diguanylate Cyclase; Twin-Arginine Translocation Pathway Signal; NMT1/THI5-Like Protein; Diguanylate Cyclase/Phosphodiesterase; Nitrate/Sulfonate/Bicarbonate ABC Transporter Permease; Diguanylate Cyclase With PAS/PAC Sensor; ABC Transporter Permease; PAS/GGDEF Domain-Containing Protein; Signal Transduction Response Regulator; PAS/PAC Sensor Signal Transduction Histidine Kinase; Two-Component Sensor Histidine Kinase; ABC Transporter; Diguanylate Cyclase With Extracellular Sensor; Two-Component Sensor Protein; PasGgdef; PAS/PAC Sensor Hybrid Histidine Kinase; Two Domain Sensory Box Histidine Kinase; Signal Transduction Protein; Diguanylate Cyclase Domain Protein; Sensory Transduction Histidine Kinase; Pyrimidine Biosynthesis; NMT1/THI5-Ike Domain-Containing Protein; Membrane Lipoprotein Lipid Attachment Site; ABC-Type Transporter Periplasmic Component; PAS/PAC Sensor-Containing Diguanylate Cyclase; Lipoprotein; Exported Protein; Multi-Sensor Signal Transduction Histidine Kinase
Number of amino acids: Translated: 336; Mature: 336
Protein sequence:
>336_residues MDWFRSLPRLLAALLCISPALAHAASPPKLQKVTFGLDWVAEAEYGGFYQAVADGIYRKYGLDVTIREGGPQVNNAQLLL AGRLDFDITSNSFLAFNFVQQKIPFVAVAAFFQKDIDVLIAHRGAGEDSFAALKGKPIAISADTRAGWWLFLKKKYGYSD SQIRPYDFSLAPFFTSKDLVVQGFLTSEPFLVKQKTGHFPVVLRLDQAGFDGYGELIATSRKLAKTDPSVVRRFIEASAE GWKSYLDGNPAPAFALIRKANPDMTPALLKFGYDQLKAHQVVEDATTAKIGIGGMTDARWKGFYEQMRAAGLYPAHFDYR KAYTLRFLPKGKAAAR
Sequences:
>Translated_336_residues MDWFRSLPRLLAALLCISPALAHAASPPKLQKVTFGLDWVAEAEYGGFYQAVADGIYRKYGLDVTIREGGPQVNNAQLLL AGRLDFDITSNSFLAFNFVQQKIPFVAVAAFFQKDIDVLIAHRGAGEDSFAALKGKPIAISADTRAGWWLFLKKKYGYSD SQIRPYDFSLAPFFTSKDLVVQGFLTSEPFLVKQKTGHFPVVLRLDQAGFDGYGELIATSRKLAKTDPSVVRRFIEASAE GWKSYLDGNPAPAFALIRKANPDMTPALLKFGYDQLKAHQVVEDATTAKIGIGGMTDARWKGFYEQMRAAGLYPAHFDYR KAYTLRFLPKGKAAAR >Mature_336_residues MDWFRSLPRLLAALLCISPALAHAASPPKLQKVTFGLDWVAEAEYGGFYQAVADGIYRKYGLDVTIREGGPQVNNAQLLL AGRLDFDITSNSFLAFNFVQQKIPFVAVAAFFQKDIDVLIAHRGAGEDSFAALKGKPIAISADTRAGWWLFLKKKYGYSD SQIRPYDFSLAPFFTSKDLVVQGFLTSEPFLVKQKTGHFPVVLRLDQAGFDGYGELIATSRKLAKTDPSVVRRFIEASAE GWKSYLDGNPAPAFALIRKANPDMTPALLKFGYDQLKAHQVVEDATTAKIGIGGMTDARWKGFYEQMRAAGLYPAHFDYR KAYTLRFLPKGKAAAR
Specific function: Unknown
COG id: COG0715
COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37227; Mature: 37227
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDWFRSLPRLLAALLCISPALAHAASPPKLQKVTFGLDWVAEAEYGGFYQAVADGIYRKY CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHH GLDVTIREGGPQVNNAQLLLAGRLDFDITSNSFLAFNFVQQKIPFVAVAAFFQKDIDVLI CCEEEEECCCCCCCCCEEEEEECEEEEECCCCEEEEEHHHHHCCHHHHHHHHHHCCEEEE AHRGAGEDSFAALKGKPIAISADTRAGWWLFLKKKYGYSDSQIRPYDFSLAPFFTSKDLV EECCCCCCCHHHHCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEECCCCCCCCEE VQGFLTSEPFLVKQKTGHFPVVLRLDQAGFDGYGELIATSRKLAKTDPSVVRRFIEASAE EEEEECCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH GWKSYLDGNPAPAFALIRKANPDMTPALLKFGYDQLKAHQVVEDATTAKIGIGGMTDARW HHHHHHCCCCCCHHHEEECCCCCCCHHHHHHCHHHHHHHHHHHHCCCEEEECCCCCCHHH KGFYEQMRAAGLYPAHFDYRKAYTLRFLPKGKAAAR HHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCC >Mature Secondary Structure MDWFRSLPRLLAALLCISPALAHAASPPKLQKVTFGLDWVAEAEYGGFYQAVADGIYRKY CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHH GLDVTIREGGPQVNNAQLLLAGRLDFDITSNSFLAFNFVQQKIPFVAVAAFFQKDIDVLI CCEEEEECCCCCCCCCEEEEEECEEEEECCCCEEEEEHHHHHCCHHHHHHHHHHCCEEEE AHRGAGEDSFAALKGKPIAISADTRAGWWLFLKKKYGYSDSQIRPYDFSLAPFFTSKDLV EECCCCCCCHHHHCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEECCCCCCCCEE VQGFLTSEPFLVKQKTGHFPVVLRLDQAGFDGYGELIATSRKLAKTDPSVVRRFIEASAE EEEEECCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH GWKSYLDGNPAPAFALIRKANPDMTPALLKFGYDQLKAHQVVEDATTAKIGIGGMTDARW HHHHHHCCCCCCHHHEEECCCCCCCHHHHHHCHHHHHHHHHHHHCCCEEEECCCCCCHHH KGFYEQMRAAGLYPAHFDYRKAYTLRFLPKGKAAAR HHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA