| Definition | Acidiphilium cryptum JF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_009484 |
| Length | 3,389,227 |
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The map label for this gene is panB [H]
Identifier: 148259678
GI number: 148259678
Start: 752071
End: 752883
Strand: Reverse
Name: panB [H]
Synonym: Acry_0665
Alternate gene names: 148259678
Gene position: 752883-752071 (Counterclockwise)
Preceding gene: 148259679
Following gene: 148259666
Centisome position: 22.21
GC content: 70.23
Gene sequence:
>813_bases ATGGCGATGGAAACGGCAGATCGGAAGGCCGACCGCAAATCGATCGGATCGTGGGAACGCGCGAAGCGCAACGGCGAGCG CCGCGCGCTGATCACCGCCTATGATTATCCGTTCGCGAAACTCGCCGAGGCCGCCGGGATCGACGGCATCCTGATCGGCG ATTCGCTGGGAATGACCGTCCAGGGCGAGCGCGACACGCTGCGGGTGACGCTGGAGCAGATGGTCTATCACACCGGCATG GTCGCGCGCGGCGCGCCCGCCTGCCTGATCATGGCCGACCTGCCCTTCGGCAGTTTCGAGGCCGGCCCTGCCCAGGCCTT CGCGAGCGCCGCCCAGTTGCTCAAGGCGGGGGCGGACATCGTCAAGCTCGAGGGCGGGGCGGCGATGGTCGAGACCGTCG GCTTCCTTTCCGCCCGCGCCGTGCCCGTCTGCGCGCATATCGGCCTGACGCCGCAGCATGTCCGCCAGCTCGGCGGCTTC CGCAAGCAGGGCAAGACCGAGGACGCGGCGGCGCGAATGATCGAGGACGCCGCCGCCCTCGCCGAGGCCGGCGCGCGGAT GGTGCTGATGGAAGCGATCCCGGCCGGACTCGGGGCCGAGATCACCAGGCGGGTGCGCGTGCCCACCATCGGCATCGGCG CCGGCAACGGGACCGACGCGCAGATCCTGGTGATGCACGACGTGCTGGGGCTGACCGGCGGCTATGTTCCGGGCTTCGCC AAGGTGTATGCCGACGGGGCGCGGATGGTGCGCGAGGCGATCGGCGCCTATGCCGAAGAGGTCCGCACCGGCATCTTCCC GCCCGCCGAATAG
Upstream 100 bases:
>100_bases GCGGCACGCTGCGCGAGGTGACGGCGGAGGGCGAGCGGCTGATCACCGAGGGCGCGGGCTGAGCCCGAGCGCGCGCAGGC ACGCCCCAGCACAGAAAGGC
Downstream 100 bases:
>100_bases GCCTCGAACAGCCGGCCGGGATCCTCCGATCCGGCGGGCAGGAGCGGAACCGGGCGATTGGCGGCCGGTTCAGCGGCCCT GCTGCGGGATCTCGATATAG
Product: 3-methyl-2-oxobutanoate hydroxymethyltransferase
Products: NA
Alternate protein names: Ketopantoate hydroxymethyltransferase; KPHMT [H]
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MAMETADRKADRKSIGSWERAKRNGERRALITAYDYPFAKLAEAAGIDGILIGDSLGMTVQGERDTLRVTLEQMVYHTGM VARGAPACLIMADLPFGSFEAGPAQAFASAAQLLKAGADIVKLEGGAAMVETVGFLSARAVPVCAHIGLTPQHVRQLGGF RKQGKTEDAAARMIEDAAALAEAGARMVLMEAIPAGLGAEITRRVRVPTIGIGAGNGTDAQILVMHDVLGLTGGYVPGFA KVYADGARMVREAIGAYAEEVRTGIFPPAE
Sequences:
>Translated_270_residues MAMETADRKADRKSIGSWERAKRNGERRALITAYDYPFAKLAEAAGIDGILIGDSLGMTVQGERDTLRVTLEQMVYHTGM VARGAPACLIMADLPFGSFEAGPAQAFASAAQLLKAGADIVKLEGGAAMVETVGFLSARAVPVCAHIGLTPQHVRQLGGF RKQGKTEDAAARMIEDAAALAEAGARMVLMEAIPAGLGAEITRRVRVPTIGIGAGNGTDAQILVMHDVLGLTGGYVPGFA KVYADGARMVREAIGAYAEEVRTGIFPPAE >Mature_269_residues AMETADRKADRKSIGSWERAKRNGERRALITAYDYPFAKLAEAAGIDGILIGDSLGMTVQGERDTLRVTLEQMVYHTGMV ARGAPACLIMADLPFGSFEAGPAQAFASAAQLLKAGADIVKLEGGAAMVETVGFLSARAVPVCAHIGLTPQHVRQLGGFR KQGKTEDAAARMIEDAAALAEAGARMVLMEAIPAGLGAEITRRVRVPTIGIGAGNGTDAQILVMHDVLGLTGGYVPGFAK VYADGARMVREAIGAYAEEVRTGIFPPAE
Specific function: Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is tranferred onto alpha-ketoisovalerate to form ketopantoate [H]
COG id: COG0413
COG function: function code H; Ketopantoate hydroxymethyltransferase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the panB family [H]
Homologues:
Organism=Escherichia coli, GI1786326, Length=257, Percent_Identity=49.8054474708171, Blast_Score=260, Evalue=7e-71, Organism=Saccharomyces cerevisiae, GI6319653, Length=273, Percent_Identity=34.0659340659341, Blast_Score=169, Evalue=4e-43,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003700 - InterPro: IPR015813 [H]
Pfam domain/function: PF02548 Pantoate_transf [H]
EC number: =2.1.2.11 [H]
Molecular weight: Translated: 28299; Mature: 28168
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMETADRKADRKSIGSWERAKRNGERRALITAYDYPFAKLAEAAGIDGILIGDSLGMTV CCCCCCHHHHHHHHCCCHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCEEEEECCCCCEE QGERDTLRVTLEQMVYHTGMVARGAPACLIMADLPFGSFEAGPAQAFASAAQLLKAGADI ECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCE VKLEGGAAMVETVGFLSARAVPVCAHIGLTPQHVRQLGGFRKQGKTEDAAARMIEDAAAL EEECCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHCCHHHCCCCHHHHHHHHHHHHHH AEAGARMVLMEAIPAGLGAEITRRVRVPTIGIGAGNGTDAQILVMHDVLGLTGGYVPGFA HHCCCCEEHHHHCCCCCCHHHHHEEECCEEEEECCCCCCCEEEEEHHHHHHCCCCCCHHH KVYADGARMVREAIGAYAEEVRTGIFPPAE HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AMETADRKADRKSIGSWERAKRNGERRALITAYDYPFAKLAEAAGIDGILIGDSLGMTV CCCCCHHHHHHHHCCCHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCEEEEECCCCCEE QGERDTLRVTLEQMVYHTGMVARGAPACLIMADLPFGSFEAGPAQAFASAAQLLKAGADI ECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCE VKLEGGAAMVETVGFLSARAVPVCAHIGLTPQHVRQLGGFRKQGKTEDAAARMIEDAAAL EEECCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHCCHHHCCCCHHHHHHHHHHHHHH AEAGARMVLMEAIPAGLGAEITRRVRVPTIGIGAGNGTDAQILVMHDVLGLTGGYVPGFA HHCCCCEEHHHHCCCCCCHHHHHEEECCEEEEECCCCCCCEEEEEHHHHHHCCCCCCHHH KVYADGARMVREAIGAYAEEVRTGIFPPAE HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA