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The map label for this gene is hofQ [C]

Identifier: 148259497

GI number: 148259497

Start: 533419

End: 534894

Strand: Reverse

Name: hofQ [C]

Synonym: Acry_0481

Alternate gene names: 148259497

Gene position: 534894-533419 (Counterclockwise)

Preceding gene: 148259503

Following gene: 148259496

Centisome position: 15.78

GC content: 69.72

Gene sequence:

>1476_bases
ATGCTTCCGTCCCGCGCGGCGAGACCCGGCATGAGACGGACCGGCACCGCGCCGACGCAGAGCGGCACTCCCTCCCCTCG
CCGGCTTATTCCGGCGCTTCTGGCCGCGGCGTTCGGCGCCGCGCTGGTTCCCGCCGCCGCCTCGCCGGCGCGACACGCCA
CAATGCGGCCGGCCGAAGCTGCGCGGGCCCGGGGCCTCACGATCGAGCAGGGTAGCGGCAGGCTCATCACCCTCAAAGGG
TCGGCGGCAAATGTCTTCGTGGCCGATCCCGGCGTCGTCGCCGTGCGGCCGGCAAGCGCGCACACGCTCTTCGTGTTCGG
CACGGCGCCCGGCTTCACCACCGTCGCGGTGACCGACGCGCAGGGCCACGCCGTTGCCACACTGCACGTCGCGGTGACGC
CGAAGACCTATCCGGCCGCGGCCATCCGCGCCGGCGCCACGCGGTCGGCGCCCGGCGCCAGGCTCTCGATTTCGAGTGCC
GCCAACGGCGTCGTCGTGCGCGGCAACGTGCCGACGCCGGTGCAGGATTACCAGATCATGCAGCAGGCGCACCTGATCGC
CGGCACGGGCGCCAAAGTGGTCAACCAGACCGAGGTGCGGCTGCCCCAGCAGGTGGCGCTCAAGGTGCGGATCGCGCAGA
TGTCGCGCACCATCACCCAGCAGCTCGGCATCAACTGGCAGAGCGCCGGCAACGGCATCTCGGTGGGCAAGTTCCTGTTC
GGCTTCAGCGCGCTCGACGTGCTGAACGGCTCGAGCCCGGCGACGCCGGCGGCGGGCAGCTACAATGCGGGGCTTTCGGT
GGGCGGCGGCGCGATCGACAGCGTGCTGGACGCGCTGAACAGCGACAATCTCGCGCATATCCTGGCGGAGCCGACACTGA
CGGCGCTGTCGGGGCAGAGTGCCAGCTTCATCGACGGCGGGTCCTTCCCGGTGCCTGTGCCGGGGCAGAACGGCCAGGTG
ACGGTGCAGTACAAGAAATTCGGCGTGCAGCTGAAGTTCCGGCCGGTGGTGCTCGACAATGGCAGCATCATCCTGCATGT
CCAGCCGACGGTAAGCTCGCCGACGACACAGAACGCCTTCCAGATCGCGGTGGCCGGCACGTCCATCGTGGTGCCGTCGC
TGTCGACGCAATCGGCCTCGACGACGGTGGTGATCGGCAGCGGGCAAACGCTCGCCATCGCCGGGCTGCTGAGCAACAGC
AGCAACCAGACCGACAAGTCGGTGCCCGGCCTCGGCGACATGCCGGTGCTCGGCGCCGCCTTCCGCGACGACAACTACAA
CCGCCAGGAACAGGAACTCGTGATCCTGGTGACACCCTACCTCGTCAAGCCCGTGAACAACGCCGGACAGCTGATGACGC
CGGACGAGGGCTGGTCTCCCCCCAACCAGATCCAGCGGATCGTCCTGCATCGCGACAGCGGCGGCGCCCGCCGCGAGATC
GTCCTGCCCGGCCAGGCCGGCTTCATCCTGCGGTGA

Upstream 100 bases:

>100_bases
CTCTAGAGTCCGTGAATGGCGGGTCCCTTGACCCGGCTCCGGCGCCAGGCGGCGCCGGCCCCATTTGAGGACAGATCGCC
TTGGCCCTTCGACTGGACAG

Downstream 100 bases:

>100_bases
GCCCCATGCGCAAGTCACGCCTGATCGTTCTCGTCACCCTGGCGGGCGCGGCCGCCCTGCTGGCCGGCTGCGCCAGCAAC
GACCCGTTCGCGCAGCCGGG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MLPSRAARPGMRRTGTAPTQSGTPSPRRLIPALLAAAFGAALVPAAASPARHATMRPAEAARARGLTIEQGSGRLITLKG
SAANVFVADPGVVAVRPASAHTLFVFGTAPGFTTVAVTDAQGHAVATLHVAVTPKTYPAAAIRAGATRSAPGARLSISSA
ANGVVVRGNVPTPVQDYQIMQQAHLIAGTGAKVVNQTEVRLPQQVALKVRIAQMSRTITQQLGINWQSAGNGISVGKFLF
GFSALDVLNGSSPATPAAGSYNAGLSVGGGAIDSVLDALNSDNLAHILAEPTLTALSGQSASFIDGGSFPVPVPGQNGQV
TVQYKKFGVQLKFRPVVLDNGSIILHVQPTVSSPTTQNAFQIAVAGTSIVVPSLSTQSASTTVVIGSGQTLAIAGLLSNS
SNQTDKSVPGLGDMPVLGAAFRDDNYNRQEQELVILVTPYLVKPVNNAGQLMTPDEGWSPPNQIQRIVLHRDSGGARREI
VLPGQAGFILR

Sequences:

>Translated_491_residues
MLPSRAARPGMRRTGTAPTQSGTPSPRRLIPALLAAAFGAALVPAAASPARHATMRPAEAARARGLTIEQGSGRLITLKG
SAANVFVADPGVVAVRPASAHTLFVFGTAPGFTTVAVTDAQGHAVATLHVAVTPKTYPAAAIRAGATRSAPGARLSISSA
ANGVVVRGNVPTPVQDYQIMQQAHLIAGTGAKVVNQTEVRLPQQVALKVRIAQMSRTITQQLGINWQSAGNGISVGKFLF
GFSALDVLNGSSPATPAAGSYNAGLSVGGGAIDSVLDALNSDNLAHILAEPTLTALSGQSASFIDGGSFPVPVPGQNGQV
TVQYKKFGVQLKFRPVVLDNGSIILHVQPTVSSPTTQNAFQIAVAGTSIVVPSLSTQSASTTVVIGSGQTLAIAGLLSNS
SNQTDKSVPGLGDMPVLGAAFRDDNYNRQEQELVILVTPYLVKPVNNAGQLMTPDEGWSPPNQIQRIVLHRDSGGARREI
VLPGQAGFILR
>Mature_491_residues
MLPSRAARPGMRRTGTAPTQSGTPSPRRLIPALLAAAFGAALVPAAASPARHATMRPAEAARARGLTIEQGSGRLITLKG
SAANVFVADPGVVAVRPASAHTLFVFGTAPGFTTVAVTDAQGHAVATLHVAVTPKTYPAAAIRAGATRSAPGARLSISSA
ANGVVVRGNVPTPVQDYQIMQQAHLIAGTGAKVVNQTEVRLPQQVALKVRIAQMSRTITQQLGINWQSAGNGISVGKFLF
GFSALDVLNGSSPATPAAGSYNAGLSVGGGAIDSVLDALNSDNLAHILAEPTLTALSGQSASFIDGGSFPVPVPGQNGQV
TVQYKKFGVQLKFRPVVLDNGSIILHVQPTVSSPTTQNAFQIAVAGTSIVVPSLSTQSASTTVVIGSGQTLAIAGLLSNS
SNQTDKSVPGLGDMPVLGAAFRDDNYNRQEQELVILVTPYLVKPVNNAGQLMTPDEGWSPPNQIQRIVLHRDSGGARREI
VLPGQAGFILR

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=247, Percent_Identity=31.9838056680162, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082242, Length=274, Percent_Identity=26.2773722627737, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 50509; Mature: 50509

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPSRAARPGMRRTGTAPTQSGTPSPRRLIPALLAAAFGAALVPAAASPARHATMRPAEA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHH
ARARGLTIEQGSGRLITLKGSAANVFVADPGVVAVRPASAHTLFVFGTAPGFTTVAVTDA
HHHCCCEEECCCCEEEEEECCCCEEEEECCCEEEEECCCCEEEEEEECCCCCEEEEEECC
QGHAVATLHVAVTPKTYPAAAIRAGATRSAPGARLSISSAANGVVVRGNVPTPVQDYQIM
CCCEEEEEEEEECCCCCCHHHHCCCCCCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHH
QQAHLIAGTGAKVVNQTEVRLPQQVALKVRIAQMSRTITQQLGINWQSAGNGISVGKFLF
HHHHEEECCCCHHCCHHHHCCCHHHHHEEHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
GFSALDVLNGSSPATPAAGSYNAGLSVGGGAIDSVLDALNSDNLAHILAEPTLTALSGQS
HHHHHHHHCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCEEEEEECCCEEEECCCC
ASFIDGGSFPVPVPGQNGQVTVQYKKFGVQLKFRPVVLDNGSIILHVQPTVSSPTTQNAF
CCEECCCCCCCCCCCCCCEEEEEEEEECEEEEEEEEEEECCEEEEEEECCCCCCCCCCEE
QIAVAGTSIVVPSLSTQSASTTVVIGSGQTLAIAGLLSNSSNQTDKSVPGLGDMPVLGAA
EEEEECCEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEE
FRDDNYNRQEQELVILVTPYLVKPVNNAGQLMTPDEGWSPPNQIQRIVLHRDSGGARREI
ECCCCCCCCCCEEEEEECCCEEECCCCCCCEECCCCCCCCHHHEEEEEEECCCCCCEEEE
VLPGQAGFILR
EECCCCCCEEC
>Mature Secondary Structure
MLPSRAARPGMRRTGTAPTQSGTPSPRRLIPALLAAAFGAALVPAAASPARHATMRPAEA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHH
ARARGLTIEQGSGRLITLKGSAANVFVADPGVVAVRPASAHTLFVFGTAPGFTTVAVTDA
HHHCCCEEECCCCEEEEEECCCCEEEEECCCEEEEECCCCEEEEEEECCCCCEEEEEECC
QGHAVATLHVAVTPKTYPAAAIRAGATRSAPGARLSISSAANGVVVRGNVPTPVQDYQIM
CCCEEEEEEEEECCCCCCHHHHCCCCCCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHH
QQAHLIAGTGAKVVNQTEVRLPQQVALKVRIAQMSRTITQQLGINWQSAGNGISVGKFLF
HHHHEEECCCCHHCCHHHHCCCHHHHHEEHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
GFSALDVLNGSSPATPAAGSYNAGLSVGGGAIDSVLDALNSDNLAHILAEPTLTALSGQS
HHHHHHHHCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCEEEEEECCCEEEECCCC
ASFIDGGSFPVPVPGQNGQVTVQYKKFGVQLKFRPVVLDNGSIILHVQPTVSSPTTQNAF
CCEECCCCCCCCCCCCCCEEEEEEEEECEEEEEEEEEEECCEEEEEEECCCCCCCCCCEE
QIAVAGTSIVVPSLSTQSASTTVVIGSGQTLAIAGLLSNSSNQTDKSVPGLGDMPVLGAA
EEEEECCEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEE
FRDDNYNRQEQELVILVTPYLVKPVNNAGQLMTPDEGWSPPNQIQRIVLHRDSGGARREI
ECCCCCCCCCCEEEEEECCCEEECCCCCCCEECCCCCCCCHHHEEEEEEECCCCCCEEEE
VLPGQAGFILR
EECCCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]