Click here to switch to the map view.

The map label for this gene is arpC [H]

Identifier: 148259113

GI number: 148259113

Start: 102503

End: 104176

Strand: Reverse

Name: arpC [H]

Synonym: Acry_0092

Alternate gene names: 148259113

Gene position: 104176-102503 (Counterclockwise)

Preceding gene: 148259115

Following gene: 148259112

Centisome position: 3.07

GC content: 62.9

Gene sequence:

>1674_bases
ATGAATTTCAATATTAAATCGGCCTCTTTTCGATATCTTGACGCATCGGCAGAAAACTCTGTAGTTTCCACTTGTCCACT
GAGGAGGCTCCCGCGTGCAGGCTGGCGGTTCTGTCCGCGTTCAGTTCAGGCACGCCAGGTACTGCATATCATGAACTTTT
CCGATATCCTGCTTCATCGCCGCGTCCGGCTGGCAACGGTTCTGCTCGGCACCACGCTGCTCGCGGGTTGCGCGGTCGGC
CCGAACTATCACCAGCCCGCGGCCCCGAAGCTGCATAGCTACACCACAAGCCGACTGCCCAACAGCACGGCTTCGACCTC
CGGCGCAGGAGGAACTGCGCAGCATCTCGTGATCGGCCAGAAAATCGCTGGCGAATGGTGGACGCTCTACCATTCGAAAC
CACTTGATACGCTGATCCGTAAGGCTCTGGCGAACAATCCGAGCCTGAAATCGGCCCAGTACACCCTGCTGGCCGCACGC
GACACCGCCCGAGCAGCCGAAGGCGGGTTTTTCCCTTCAATCTCTGGAAGTTTCCAGGCCGAACGAGTGCGCAGCGGACT
GGGAACGACGGGCCTCGGCTCTGCCGGCGCCGGCCTCACCTATTCGCTGCGCAACGCCTCCGTCGCGGTATCCTATGCGC
CCGACGTGTTTGGCGGCACACGGAGGCAAGTCGAAAGCCTGCATGCTCAGGCCGAACAGCAGCGATTCGCACTTGAGGCT
ACCTATCTCTCGCTCACTGCCAACATCGTCACCGCCTCGGTTACCGAAGCTTCGCTGACCGCCCAGATCGAGGCGACGGA
GCGGATCATCCGCGCGGAGAAAGGACTGCTCGACATTCTCGACCGTCAGGTGGCGCTTGGAGGCATTCCCGAAACCAACG
CGATCACCCAACGCACCCAGCTGGCCCAGACAGAAGCAACACTACCGCCTCTGCGCAAGCAGCTCGCGCAGACACGGGAC
CAGCTCGCAGCCTATGAAGGAGTTCCTCCGAGCCGCTTCCACGCAGCCGATTTCACCCTGGCCGATCTCGCGCTGCCGGA
AAGCCTGCCGGTGAGCCTCCCCTCCGCGCTGGTACGCCAGCGCCCAGACATTCGCGAGGCGGCAGCGGTCTTGCACCAGG
ACACGGCGCAGGTCGGCGTCGCCACCGCGAACATGCTGCCGCAAATCACCCTTTCCGCCGGCATCGGCCATGAAGCGCTG
GACGGCCAGGCCCTGTTCGCTCCGCAGACCCTGTTGTGGAATCTTGCCGCCGGCATCACCCAGCCCTTCTTCGAGGGTGG
CACGCTGTTCTACAAGCGCCGCGCCGCTGTTGCGACCATGAAGGCAGCTGCCGAGACCTATGAGAACACGGTCGTACTCG
CCTTCCAGAACGTGGCGGACGCACTGGAAGCCCTGCATTACGACGCCATCGCGCTTGCGGCGGACACTGCGGCCGAGCAC
GACGCGCAGCGCAGCCTCAATCTCATCGAGCGTCAGTTCCGCCTCGGCGGCGTGCCCTACACCTCGGTGCTGACCGCCGA
GCAAACCTACGAATCGGCCGTCATCACCCGCATCAAGGCCACTGCCCAGCGCTATGCCGATACGGCGGCGCTGTTCCAGG
CTCTCGGTGGCGGCTGGTGGCACCGGCATGACGTGAAGAAGCAAGTCGAAACCTGCTGTGGAGTATTGCCATGA

Upstream 100 bases:

>100_bases
CGTTGCCGCGCCGCATCTGCGGCGTCGCGCCGGCGGCAAACTCGTGTGACAATACCCATCAGCCAGTTCCTCGCCTTCTT
CTCCCATCGCAGGAACATTC

Downstream 100 bases:

>100_bases
CGGCGCCCGCCCCCGGAACCGCCAGCGAAACACCCGAGCACAAGACGAAGAAACCCTCGATCCTGCTGCGCATGATCGTG
ATGCTCGTGCTTGCGGCCCT

Product: RND efflux system outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 557

Protein sequence:

>557_residues
MNFNIKSASFRYLDASAENSVVSTCPLRRLPRAGWRFCPRSVQARQVLHIMNFSDILLHRRVRLATVLLGTTLLAGCAVG
PNYHQPAAPKLHSYTTSRLPNSTASTSGAGGTAQHLVIGQKIAGEWWTLYHSKPLDTLIRKALANNPSLKSAQYTLLAAR
DTARAAEGGFFPSISGSFQAERVRSGLGTTGLGSAGAGLTYSLRNASVAVSYAPDVFGGTRRQVESLHAQAEQQRFALEA
TYLSLTANIVTASVTEASLTAQIEATERIIRAEKGLLDILDRQVALGGIPETNAITQRTQLAQTEATLPPLRKQLAQTRD
QLAAYEGVPPSRFHAADFTLADLALPESLPVSLPSALVRQRPDIREAAAVLHQDTAQVGVATANMLPQITLSAGIGHEAL
DGQALFAPQTLLWNLAAGITQPFFEGGTLFYKRRAAVATMKAAAETYENTVVLAFQNVADALEALHYDAIALAADTAAEH
DAQRSLNLIERQFRLGGVPYTSVLTAEQTYESAVITRIKATAQRYADTAALFQALGGGWWHRHDVKKQVETCCGVLP

Sequences:

>Translated_557_residues
MNFNIKSASFRYLDASAENSVVSTCPLRRLPRAGWRFCPRSVQARQVLHIMNFSDILLHRRVRLATVLLGTTLLAGCAVG
PNYHQPAAPKLHSYTTSRLPNSTASTSGAGGTAQHLVIGQKIAGEWWTLYHSKPLDTLIRKALANNPSLKSAQYTLLAAR
DTARAAEGGFFPSISGSFQAERVRSGLGTTGLGSAGAGLTYSLRNASVAVSYAPDVFGGTRRQVESLHAQAEQQRFALEA
TYLSLTANIVTASVTEASLTAQIEATERIIRAEKGLLDILDRQVALGGIPETNAITQRTQLAQTEATLPPLRKQLAQTRD
QLAAYEGVPPSRFHAADFTLADLALPESLPVSLPSALVRQRPDIREAAAVLHQDTAQVGVATANMLPQITLSAGIGHEAL
DGQALFAPQTLLWNLAAGITQPFFEGGTLFYKRRAAVATMKAAAETYENTVVLAFQNVADALEALHYDAIALAADTAAEH
DAQRSLNLIERQFRLGGVPYTSVLTAEQTYESAVITRIKATAQRYADTAALFQALGGGWWHRHDVKKQVETCCGVLP
>Mature_557_residues
MNFNIKSASFRYLDASAENSVVSTCPLRRLPRAGWRFCPRSVQARQVLHIMNFSDILLHRRVRLATVLLGTTLLAGCAVG
PNYHQPAAPKLHSYTTSRLPNSTASTSGAGGTAQHLVIGQKIAGEWWTLYHSKPLDTLIRKALANNPSLKSAQYTLLAAR
DTARAAEGGFFPSISGSFQAERVRSGLGTTGLGSAGAGLTYSLRNASVAVSYAPDVFGGTRRQVESLHAQAEQQRFALEA
TYLSLTANIVTASVTEASLTAQIEATERIIRAEKGLLDILDRQVALGGIPETNAITQRTQLAQTEATLPPLRKQLAQTRD
QLAAYEGVPPSRFHAADFTLADLALPESLPVSLPSALVRQRPDIREAAAVLHQDTAQVGVATANMLPQITLSAGIGHEAL
DGQALFAPQTLLWNLAAGITQPFFEGGTLFYKRRAAVATMKAAAETYENTVVLAFQNVADALEALHYDAIALAADTAAEH
DAQRSLNLIERQFRLGGVPYTSVLTAEQTYESAVITRIKATAQRYADTAALFQALGGGWWHRHDVKKQVETCCGVLP

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=477, Percent_Identity=25.5765199161426, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 59932; Mature: 59932

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFNIKSASFRYLDASAENSVVSTCPLRRLPRAGWRFCPRSVQARQVLHIMNFSDILLHR
CCCCCCCCCEEEEECCCCCCCHHHCCHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHH
RVRLATVLLGTTLLAGCAVGPNYHQPAAPKLHSYTTSRLPNSTASTSGAGGTAQHLVIGQ
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHEEECH
KIAGEWWTLYHSKPLDTLIRKALANNPSLKSAQYTLLAARDTARAAEGGFFPSISGSFQA
HHCCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHCCCCCCCCCCCCHH
ERVRSGLGTTGLGSAGAGLTYSLRNASVAVSYAPDVFGGTRRQVESLHAQAEQQRFALEA
HHHHHCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
TYLSLTANIVTASVTEASLTAQIEATERIIRAEKGLLDILDRQVALGGIPETNAITQRTQ
HHHHHHHHHHEEEEEHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LAQTEATLPPLRKQLAQTRDQLAAYEGVPPSRFHAADFTLADLALPESLPVSLPSALVRQ
HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHC
RPDIREAAAVLHQDTAQVGVATANMLPQITLSAGIGHEALDGQALFAPQTLLWNLAAGIT
CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECHHHHHHHHHHHHH
QPFFEGGTLFYKRRAAVATMKAAAETYENTVVLAFQNVADALEALHYDAIALAADTAAEH
HHHHCCCCEEEHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
DAQRSLNLIERQFRLGGVPYTSVLTAEQTYESAVITRIKATAQRYADTAALFQALGGGWW
HHHHHHHHHHHHHHCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
HRHDVKKQVETCCGVLP
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNFNIKSASFRYLDASAENSVVSTCPLRRLPRAGWRFCPRSVQARQVLHIMNFSDILLHR
CCCCCCCCCEEEEECCCCCCCHHHCCHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHH
RVRLATVLLGTTLLAGCAVGPNYHQPAAPKLHSYTTSRLPNSTASTSGAGGTAQHLVIGQ
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHEEECH
KIAGEWWTLYHSKPLDTLIRKALANNPSLKSAQYTLLAARDTARAAEGGFFPSISGSFQA
HHCCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHCCCCCCCCCCCCHH
ERVRSGLGTTGLGSAGAGLTYSLRNASVAVSYAPDVFGGTRRQVESLHAQAEQQRFALEA
HHHHHCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
TYLSLTANIVTASVTEASLTAQIEATERIIRAEKGLLDILDRQVALGGIPETNAITQRTQ
HHHHHHHHHHEEEEEHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LAQTEATLPPLRKQLAQTRDQLAAYEGVPPSRFHAADFTLADLALPESLPVSLPSALVRQ
HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHC
RPDIREAAAVLHQDTAQVGVATANMLPQITLSAGIGHEALDGQALFAPQTLLWNLAAGIT
CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECHHHHHHHHHHHHH
QPFFEGGTLFYKRRAAVATMKAAAETYENTVVLAFQNVADALEALHYDAIALAADTAAEH
HHHHCCCCEEEHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
DAQRSLNLIERQFRLGGVPYTSVLTAEQTYESAVITRIKATAQRYADTAALFQALGGGWW
HHHHHHHHHHHHHHCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
HRHDVKKQVETCCGVLP
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]