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The map label for this gene is 148243391

Identifier: 148243391

GI number: 148243391

Start: 1989676

End: 1991136

Strand: Direct

Name: 148243391

Synonym: SynRCC307_2292

Alternate gene names: NA

Gene position: 1989676-1991136 (Clockwise)

Preceding gene: 148243390

Following gene: 148243399

Centisome position: 89.43

GC content: 64.0

Gene sequence:

>1461_bases
ATGACCGCTGCCCCTGCAGCTCCGAGCTACACCCGCAGCGACTGGTCCAGTGCCTTTCGCAATGTGGGGCAAGAGCTCAG
CGATGTGATGCTGGAGCCCACGCGCGGCCAGATCCCCGATGCGCTGGCCGGGGTGCTGTATCGCAATGGCCCTGGCCGGC
TGGAACGTGGCGGCCAATGGCTGCATCACCCCTTTGATGGCGACGGCATGATCACTGCGCTGCAACTGGCCGGTGGCCGG
CTGCAGCTGAGCAACCGCTTTGTGCGCACCGAAGGCTGGCTAGCCGAAGAAGCCGCCGGCAAGGTGCTCTACCGCGGCGT
ATTTGGCAGCCAAAAGCCTGGCGGGGTGATGGCCAATGCCTTTGATCTGCGCCTGAAAAACATTGCCAACACCGGTGTGG
TGCGTTTAGGCGATGACCTGTTGGCCCTCTGGGAAGCCGCCGAACCCCATGCCCTCGATCCAGACAGCCTGGAAACCCGC
GGCCTGAGCCGCCTCAACGGGGTGCTCAAGCCTGGTGAAGCCTTCAGCGCCCATCCCCGCTTTGATCCCGGCCACCACGG
CGATCCGCGCATGGTGACCTTCGGCGTCAAAACCGGACCACGCAGCACGGTGCGGCTGATGGAATTCGCGGCCGACGGCA
GCCTCCTGCATGACCGCCGCGACAGCTTCAACGGCTTTGCCTTCTTGCATGATTTCGCCATCACGCCCAACTGGGCTGTG
TTCTGGCAAAACGCCATCAACTTCAATCCGCTGCCCTTTGTTTTCGGGCAAAAGGGTGCCGCCCAGTGCCTGGAATCCAA
CCCCAAAGGGCAGGCCAAGTTCTGGTTGGTTCCGCGCGATAGCGGCGCCTTCGCCGGCCAAAGCGCCAAGGTCATCGACG
CGCCGGAAGGTTTTGTCTTCCATCACCTCAATGCCTGGGAAGAGGGCAGCACGGTGGTGCTCGAAAGCATCGTCTACGAC
GATTTCCCCTCGATCGGACCGGGGGTCGACTTCCGCGAAGTCGACTTTGAGCAGATCCCCGAAGGCCTGCTGGAGCGTTG
CCGCATCGACACCGAAACGGCGACAGCTCAGCGGGAGCGGCTTAGCGAGCGCTGCTGCGAATTTGCGATGGTCAATCCCA
ACCGGGTGGGCCTCCAGGCTCGCTACAGCTGGATGGCCGTGGCCGAGCGCGAGCAGGGCAACGATCCGCTGCAAGCGATT
CGCAAGCTGGATTTGGCCAGCGGCGAGAGCCGTGTGTGGAGCGCCGCCCCTCGGGGCTTCGTCAGTGAACCGGTGATGGT
GGCCAACCCTGGCGGGACAGCCGAAGACGATGGCTGGGTGCTGTGTCTGGTCTGGAATGGGGGCCGCTGCGCCAGCGATC
TGGTGATCCTTGATGCCAGCACACTCAACGAGCAGGCCGTCTTCGAGCTGCCCCTAGCGATTCCCCACGGCCTGCACGGC
AGCTGGGTGCAGGCCAGCTGA

Upstream 100 bases:

>100_bases
GAGTGGGAGCTGCAGGAATGGATCAGCAGCGTGGGGCAATTGGCCACCGACGCACCTTCACAGTCCTTCACGAGATGATG
GGGGCCACCGCCGGCCCGAC

Downstream 100 bases:

>100_bases
TTAGCCCTGCTGCCGCTGCCATTCCCGCCAAGCCAAGCGCGGTGCTGTCCACAGCGTGGTGAGCACCAGCGGGGTGACAG
GAACCGCCGCAATCACGATG

Product: lignostilbene-alpha, beta-dioxygenase

Products: NA

Alternate protein names: ACO; 8'-apo-beta-carotenal 15,15'-oxygenase; Diox1 [H]

Number of amino acids: Translated: 486; Mature: 485

Protein sequence:

>486_residues
MTAAPAAPSYTRSDWSSAFRNVGQELSDVMLEPTRGQIPDALAGVLYRNGPGRLERGGQWLHHPFDGDGMITALQLAGGR
LQLSNRFVRTEGWLAEEAAGKVLYRGVFGSQKPGGVMANAFDLRLKNIANTGVVRLGDDLLALWEAAEPHALDPDSLETR
GLSRLNGVLKPGEAFSAHPRFDPGHHGDPRMVTFGVKTGPRSTVRLMEFAADGSLLHDRRDSFNGFAFLHDFAITPNWAV
FWQNAINFNPLPFVFGQKGAAQCLESNPKGQAKFWLVPRDSGAFAGQSAKVIDAPEGFVFHHLNAWEEGSTVVLESIVYD
DFPSIGPGVDFREVDFEQIPEGLLERCRIDTETATAQRERLSERCCEFAMVNPNRVGLQARYSWMAVAEREQGNDPLQAI
RKLDLASGESRVWSAAPRGFVSEPVMVANPGGTAEDDGWVLCLVWNGGRCASDLVILDASTLNEQAVFELPLAIPHGLHG
SWVQAS

Sequences:

>Translated_486_residues
MTAAPAAPSYTRSDWSSAFRNVGQELSDVMLEPTRGQIPDALAGVLYRNGPGRLERGGQWLHHPFDGDGMITALQLAGGR
LQLSNRFVRTEGWLAEEAAGKVLYRGVFGSQKPGGVMANAFDLRLKNIANTGVVRLGDDLLALWEAAEPHALDPDSLETR
GLSRLNGVLKPGEAFSAHPRFDPGHHGDPRMVTFGVKTGPRSTVRLMEFAADGSLLHDRRDSFNGFAFLHDFAITPNWAV
FWQNAINFNPLPFVFGQKGAAQCLESNPKGQAKFWLVPRDSGAFAGQSAKVIDAPEGFVFHHLNAWEEGSTVVLESIVYD
DFPSIGPGVDFREVDFEQIPEGLLERCRIDTETATAQRERLSERCCEFAMVNPNRVGLQARYSWMAVAEREQGNDPLQAI
RKLDLASGESRVWSAAPRGFVSEPVMVANPGGTAEDDGWVLCLVWNGGRCASDLVILDASTLNEQAVFELPLAIPHGLHG
SWVQAS
>Mature_485_residues
TAAPAAPSYTRSDWSSAFRNVGQELSDVMLEPTRGQIPDALAGVLYRNGPGRLERGGQWLHHPFDGDGMITALQLAGGRL
QLSNRFVRTEGWLAEEAAGKVLYRGVFGSQKPGGVMANAFDLRLKNIANTGVVRLGDDLLALWEAAEPHALDPDSLETRG
LSRLNGVLKPGEAFSAHPRFDPGHHGDPRMVTFGVKTGPRSTVRLMEFAADGSLLHDRRDSFNGFAFLHDFAITPNWAVF
WQNAINFNPLPFVFGQKGAAQCLESNPKGQAKFWLVPRDSGAFAGQSAKVIDAPEGFVFHHLNAWEEGSTVVLESIVYDD
FPSIGPGVDFREVDFEQIPEGLLERCRIDTETATAQRERLSERCCEFAMVNPNRVGLQARYSWMAVAEREQGNDPLQAIR
KLDLASGESRVWSAAPRGFVSEPVMVANPGGTAEDDGWVLCLVWNGGRCASDLVILDASTLNEQAVFELPLAIPHGLHGS
WVQAS

Specific function: Cleaves a number of carotenals and carotenols in the all-trans configuration at the 15-15' double bond producing retinal or retinol, respectively. Also shows activity toward lycopenals and the corresponding alcohols. Does not cleave beta- carotene or lyco

COG id: COG3670

COG function: function code Q; Lignostilbene-alpha,beta-dioxygenase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid oxygenase family [H]

Homologues:

Organism=Caenorhabditis elegans, GI32564756, Length=536, Percent_Identity=24.4402985074627, Blast_Score=105, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004294 [H]

Pfam domain/function: PF03055 RPE65 [H]

EC number: =1.14.99.41 [H]

Molecular weight: Translated: 53103; Mature: 52972

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAPAAPSYTRSDWSSAFRNVGQELSDVMLEPTRGQIPDALAGVLYRNGPGRLERGGQW
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEECCCCCCCCCCCE
LHHPFDGDGMITALQLAGGRLQLSNRFVRTEGWLAEEAAGKVLYRGVFGSQKPGGVMANA
ECCCCCCCCCEEEEEECCCEEEECCEEEECCCCHHHHHHCCEEEEECCCCCCCCCEEEHH
FDLRLKNIANTGVVRLGDDLLALWEAAEPHALDPDSLETRGLSRLNGVLKPGEAFSAHPR
HHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
FDPGHHGDPRMVTFGVKTGPRSTVRLMEFAADGSLLHDRRDSFNGFAFLHDFAITPNWAV
CCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHCCCCCEEEEEEEECCCCEEE
FWQNAINFNPLPFVFGQKGAAQCLESNPKGQAKFWLVPRDSGAFAGQSAKVIDAPEGFVF
EEECCCCCCCCCEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCEEE
HHLNAWEEGSTVVLESIVYDDFPSIGPGVDFREVDFEQIPEGLLERCRIDTETATAQRER
EECCCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
LSERCCEFAMVNPNRVGLQARYSWMAVAEREQGNDPLQAIRKLDLASGESRVWSAAPRGF
HHHHHHHEEECCCCCCCEEEHHHEEEEECHHCCCCHHHHHHHHHCCCCCCCEECCCCCCC
VSEPVMVANPGGTAEDDGWVLCLVWNGGRCASDLVILDASTLNEQAVFELPLAIPHGLHG
CCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCC
SWVQAS
CEEECC
>Mature Secondary Structure 
TAAPAAPSYTRSDWSSAFRNVGQELSDVMLEPTRGQIPDALAGVLYRNGPGRLERGGQW
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEECCCCCCCCCCCE
LHHPFDGDGMITALQLAGGRLQLSNRFVRTEGWLAEEAAGKVLYRGVFGSQKPGGVMANA
ECCCCCCCCCEEEEEECCCEEEECCEEEECCCCHHHHHHCCEEEEECCCCCCCCCEEEHH
FDLRLKNIANTGVVRLGDDLLALWEAAEPHALDPDSLETRGLSRLNGVLKPGEAFSAHPR
HHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
FDPGHHGDPRMVTFGVKTGPRSTVRLMEFAADGSLLHDRRDSFNGFAFLHDFAITPNWAV
CCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHCCCCCEEEEEEEECCCCEEE
FWQNAINFNPLPFVFGQKGAAQCLESNPKGQAKFWLVPRDSGAFAGQSAKVIDAPEGFVF
EEECCCCCCCCCEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCEEE
HHLNAWEEGSTVVLESIVYDDFPSIGPGVDFREVDFEQIPEGLLERCRIDTETATAQRER
EECCCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
LSERCCEFAMVNPNRVGLQARYSWMAVAEREQGNDPLQAIRKLDLASGESRVWSAAPRGF
HHHHHHHEEECCCCCCCEEEHHHEEEEECHHCCCCHHHHHHHHHCCCCCCCEECCCCCCC
VSEPVMVANPGGTAEDDGWVLCLVWNGGRCASDLVILDASTLNEQAVFELPLAIPHGLHG
CCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCC
SWVQAS
CEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]