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The map label for this gene is psbA [H]

Identifier: 148243282

GI number: 148243282

Start: 1894037

End: 1895116

Strand: Direct

Name: psbA [H]

Synonym: SynRCC307_2183

Alternate gene names: 148243282

Gene position: 1894037-1895116 (Clockwise)

Preceding gene: 148243280

Following gene: 148243283

Centisome position: 85.13

GC content: 60.19

Gene sequence:

>1080_bases
ATGCAAACCACCATTCAGCAGCGCTCCGGCGCCTCTGCGTGGCAGCAGTTCTGCGAGTGGGTCACCAGCACCGACAACCG
CCTCTATGTGGGTTGGTTCGGTGTTCTGATGATCCCGACTCTGCTGGCTGCCACCACCTGCTTCATCGTTGCCTTCATCG
CCGCTCCCCCGGTTGATATCGACGGCATCCGCGAGCCTGTCGCCGGCTCCCTGCTTTACGGCAACAACATCATCTCCGGT
GCTGTTGTTCCTTCCAGCAACGCCATTGGCCTGCACTTCTATCCCATCTGGGAAGCCGCTTCCCTCGATGAGTGGCTGTA
CAACGGCGGTCCTTTCCAGCTGGTGATCTTCCACTTCCTCATCGGCATCTACGCCTACATGGGCCGTGAGTGGGAACTCT
CCTACCGCTTGGGCATGCGCCCTTGGATCTGCATTGCTTACAGCGCCCCTGTGGCTGCTGCTTCTGCAGTGTTCCTGGTC
TACCCCTTCGGTCAGGGTTCGTTCTCTGACGCGATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGCTGGTGTTCCA
GGCCGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTGGCAGGCGTCTTCGGCGGCAGCTTGTTCTCCGCGA
TGCACGGCTCCCTGGTGACCTCCTCCCTGGTGCGTGAAACCACCGAGAGCGAGTCCCAGAACTACGGCTACAAGTTCGGC
CAAGAGGAAGAGACCTACAACATCGTGGCTGCCCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCCTCGTTCAACAA
CAGCCGCAGCCTTCACTTCTTCCTGGCTGCCTGGCCTGTGGTTGGCATCTGGTTCACCGCCCTTGGCGTGAGCACGATGG
CCTTCAACCTGAACGGCTTCAACTTCAACCAGTCCATCCTGGATTCCCAGGGTCGTGTGCTGAACACCTGGGCTGACATC
CTCAACCGTGCCGGCCTCGGCATGGAAGTGATGCACGAGCGCAACGCTCACAACTTCCCCCTCGACCTGGCTGCTGCCGA
GAGCGCCCCTGTGGCTCTCCAGGCTCCTGCCATCGGTTGA

Upstream 100 bases:

>100_bases
GAAAAAGTTGGTTTACATCCCGCAATGTTGCTTTAAAATTCTGAGACCGGAAATTGCTCCGGGAATCCATACCGCCTCCG
GGCACACCCCAAACGCACTC

Downstream 100 bases:

>100_bases
TCTGGAATCAACAAACGATTCAGATCAACTGAATCGGAAAGCCCCCTCCTCGGAGGGGGCTTTTTGTTGTGCGGATGCAG
GCTGAATCCAAGCTGGCTAT

Product: photosystem II protein D1

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein 1; Photosystem II protein D1 1 [H]

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MQTTIQQRSGASAWQQFCEWVTSTDNRLYVGWFGVLMIPTLLAATTCFIVAFIAAPPVDIDGIREPVAGSLLYGNNIISG
AVVPSSNAIGLHFYPIWEAASLDEWLYNGGPFQLVIFHFLIGIYAYMGREWELSYRLGMRPWICIAYSAPVAAASAVFLV
YPFGQGSFSDAMPLGISGTFNYMLVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTESESQNYGYKFG
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGVSTMAFNLNGFNFNQSILDSQGRVLNTWADI
LNRAGLGMEVMHERNAHNFPLDLAAAESAPVALQAPAIG

Sequences:

>Translated_359_residues
MQTTIQQRSGASAWQQFCEWVTSTDNRLYVGWFGVLMIPTLLAATTCFIVAFIAAPPVDIDGIREPVAGSLLYGNNIISG
AVVPSSNAIGLHFYPIWEAASLDEWLYNGGPFQLVIFHFLIGIYAYMGREWELSYRLGMRPWICIAYSAPVAAASAVFLV
YPFGQGSFSDAMPLGISGTFNYMLVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTESESQNYGYKFG
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGVSTMAFNLNGFNFNQSILDSQGRVLNTWADI
LNRAGLGMEVMHERNAHNFPLDLAAAESAPVALQAPAIG
>Mature_359_residues
MQTTIQQRSGASAWQQFCEWVTSTDNRLYVGWFGVLMIPTLLAATTCFIVAFIAAPPVDIDGIREPVAGSLLYGNNIISG
AVVPSSNAIGLHFYPIWEAASLDEWLYNGGPFQLVIFHFLIGIYAYMGREWELSYRLGMRPWICIAYSAPVAAASAVFLV
YPFGQGSFSDAMPLGISGTFNYMLVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTESESQNYGYKFG
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGVSTMAFNLNGFNFNQSILDSQGRVLNTWADI
LNRAGLGMEVMHERNAHNFPLDLAAAESAPVALQAPAIG

Specific function: This is one of the two reaction center proteins of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000484
- InterPro:   IPR005867 [H]

Pfam domain/function: PF00124 Photo_RC [H]

EC number: NA

Molecular weight: Translated: 39458; Mature: 39458

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTTIQQRSGASAWQQFCEWVTSTDNRLYVGWFGVLMIPTLLAATTCFIVAFIAAPPVDI
CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGIREPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPFQLVIFHFL
CCCCCCCCCEEEECCCEEECEEECCCCCEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHH
IGIYAYMGREWELSYRLGMRPWICIAYSAPVAAASAVFLVYPFGQGSFSDAMPLGISGTF
HHHHHHHCCCEEEEEEECCCCEEEEEECCCHHHCCEEEEEEECCCCCCCCCCCCCCCCCE
NYMLVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTESESQNYGYKFG
EEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGVSTMAFNLNGF
CCCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHEEEEECCC
NFNQSILDSQGRVLNTWADILNRAGLGMEVMHERNAHNFPLDLAAAESAPVALQAPAIG
CCCHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEECCCCCCEEEECCCCC
>Mature Secondary Structure
MQTTIQQRSGASAWQQFCEWVTSTDNRLYVGWFGVLMIPTLLAATTCFIVAFIAAPPVDI
CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGIREPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPFQLVIFHFL
CCCCCCCCCEEEECCCEEECEEECCCCCEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHH
IGIYAYMGREWELSYRLGMRPWICIAYSAPVAAASAVFLVYPFGQGSFSDAMPLGISGTF
HHHHHHHCCCEEEEEEECCCCEEEEEECCCHHHCCEEEEEEECCCCCCCCCCCCCCCCCE
NYMLVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTESESQNYGYKFG
EEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGVSTMAFNLNGF
CCCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHEEEEECCC
NFNQSILDSQGRVLNTWADILNRAGLGMEVMHERNAHNFPLDLAAAESAPVALQAPAIG
CCCHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEECCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA