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The map label for this gene is rpcE [H]

Identifier: 148243165

GI number: 148243165

Start: 1786730

End: 1787554

Strand: Direct

Name: rpcE [H]

Synonym: SynRCC307_2066

Alternate gene names: 148243165

Gene position: 1786730-1787554 (Clockwise)

Preceding gene: 148243163

Following gene: 148243166

Centisome position: 80.31

GC content: 64.12

Gene sequence:

>825_bases
ATGAACGACAACGCCTCAGCAGGCCAACCCATTTCGGAAGCTGAGGCACTTGAGCGGCTCGAGCAACGCGACGATCCCAG
CCAGCGCTACTACGCCGCCTGGTGGCTTGGGCGCATGCGCTGCCAAAACCCCAAAGCCATCAGCCTGCTGATCGATGCCC
TGGGCAGTGTGTTGGGCCAACCAGCGAGCCCCGATGACTTGATGGTGGCCCGCAACGCTGCCCGGGCCTTGGGGAAGCTG
CAATCCCCAGCCGCGATGGCGAGTTTGCTGCAGGCGCTGGAACACAGCGATCACGATTTACGGGAAGCCGCGGCCCGCTC
CCTCGGTGAAAGTGGCGACACCAAGGCGCTACCCGCCCTGCTGAGCACACTCAATCGCAGCAGCATTGAGCCCAGTGCGG
CGACCCAGGCGCGCTTGGACCAACCATGCGAGGCCCTGCTGGAGGCAATTGGCTGCTTAGCCAAGGGCAGCCAGGATCCC
AGCATCTGCCAAGCGCTGCAGCGCTTTTGCGAGCATCCGCGGCCCATGGTGCAGAGCGCCGCCTGCCGCGCGCTGGTGCT
GGTCAGTGGAGACGGCCAGTGGGCCGAAGGAATGTTGAACCTGCTCAACGATCCAGAGCCATTGATTCGCCGCGGTGCCG
TTTTGGATTTAGGGGCCAGCGGCTGGCGAGATGCAGCCGAAGCCATTGCCGGCTGCGCAGCTGAAAGCAACATCAAGCTG
CTGGCCCTGCGCCAGTTATTGGAGCAACCGCTCCAAGGCCCCGCGCCCTCAGCCCTGGGCGAGCAAGAGCGCCACTTGTT
GACCCTGATGGATGGTTTGCTGTGA

Upstream 100 bases:

>100_bases
ACAAGCGCTGCTCCCGGTCCAGGGGAGTGGACCGCTTCGCCATTGGGTTACTTAACTCGTTATCTCAACCTTAAGGACAT
CTCCGCCTGACTTCCACCCC

Downstream 100 bases:

>100_bases
GTCAGGCCAATGCCGAAGCACTAGAAACACAGCTGCAGGCCATTGCGCAGGCCGCCACCCGCGAGGCGTTAGCGAACGCC
AGCGCCCAGCTGGTGGCCTT

Product: phycobilin lyase alpha subunit

Products: NA

Alternate protein names: Phycocyanin operon protein CpcE [H]

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MNDNASAGQPISEAEALERLEQRDDPSQRYYAAWWLGRMRCQNPKAISLLIDALGSVLGQPASPDDLMVARNAARALGKL
QSPAAMASLLQALEHSDHDLREAAARSLGESGDTKALPALLSTLNRSSIEPSAATQARLDQPCEALLEAIGCLAKGSQDP
SICQALQRFCEHPRPMVQSAACRALVLVSGDGQWAEGMLNLLNDPEPLIRRGAVLDLGASGWRDAAEAIAGCAAESNIKL
LALRQLLEQPLQGPAPSALGEQERHLLTLMDGLL

Sequences:

>Translated_274_residues
MNDNASAGQPISEAEALERLEQRDDPSQRYYAAWWLGRMRCQNPKAISLLIDALGSVLGQPASPDDLMVARNAARALGKL
QSPAAMASLLQALEHSDHDLREAAARSLGESGDTKALPALLSTLNRSSIEPSAATQARLDQPCEALLEAIGCLAKGSQDP
SICQALQRFCEHPRPMVQSAACRALVLVSGDGQWAEGMLNLLNDPEPLIRRGAVLDLGASGWRDAAEAIAGCAAESNIKL
LALRQLLEQPLQGPAPSALGEQERHLLTLMDGLL
>Mature_274_residues
MNDNASAGQPISEAEALERLEQRDDPSQRYYAAWWLGRMRCQNPKAISLLIDALGSVLGQPASPDDLMVARNAARALGKL
QSPAAMASLLQALEHSDHDLREAAARSLGESGDTKALPALLSTLNRSSIEPSAATQARLDQPCEALLEAIGCLAKGSQDP
SICQALQRFCEHPRPMVQSAACRALVLVSGDGQWAEGMLNLLNDPEPLIRRGAVLDLGASGWRDAAEAIAGCAAESNIKL
LALRQLLEQPLQGPAPSALGEQERHLLTLMDGLL

Specific function: Required for the chromophorylation of the cpcA gene product [H]

COG id: COG1413

COG function: function code C; FOG: HEAT repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: 4.-.-.-

Molecular weight: Translated: 29194; Mature: 29194

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDNASAGQPISEAEALERLEQRDDPSQRYYAAWWLGRMRCQNPKAISLLIDALGSVLGQ
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
PASPDDLMVARNAARALGKLQSPAAMASLLQALEHSDHDLREAAARSLGESGDTKALPAL
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH
LSTLNRSSIEPSAATQARLDQPCEALLEAIGCLAKGSQDPSICQALQRFCEHPRPMVQSA
HHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHH
ACRALVLVSGDGQWAEGMLNLLNDPEPLIRRGAVLDLGASGWRDAAEAIAGCAAESNIKL
HHHEEEEECCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCCHHHHHHHHHHHHCCCCHHH
LALRQLLEQPLQGPAPSALGEQERHLLTLMDGLL
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNDNASAGQPISEAEALERLEQRDDPSQRYYAAWWLGRMRCQNPKAISLLIDALGSVLGQ
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
PASPDDLMVARNAARALGKLQSPAAMASLLQALEHSDHDLREAAARSLGESGDTKALPAL
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH
LSTLNRSSIEPSAATQARLDQPCEALLEAIGCLAKGSQDPSICQALQRFCEHPRPMVQSA
HHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHH
ACRALVLVSGDGQWAEGMLNLLNDPEPLIRRGAVLDLGASGWRDAAEAIAGCAAESNIKL
HHHEEEEECCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCCHHHHHHHHHHHHCCCCHHH
LALRQLLEQPLQGPAPSALGEQERHLLTLMDGLL
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7524727 [H]