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The map label for this gene is mpeE [H]

Identifier: 148243127

GI number: 148243127

Start: 1758640

End: 1759476

Strand: Direct

Name: mpeE [H]

Synonym: SynRCC307_2028

Alternate gene names: 148243127

Gene position: 1758640-1759476 (Clockwise)

Preceding gene: 148243126

Following gene: 148243128

Centisome position: 79.04

GC content: 57.83

Gene sequence:

>837_bases
ATGGTTGTCATCAAACCGAAGCGTGATTTCACCAGCCTGAATCGCGTCTCTTACGCCGCCAGCAACACGGCCAAGAAATC
GCAAGCCGCCACCACGATTGCCCAGTACAAGCACGACATCTGCTCCAACCTGGGTATTGGAATTGGCCCTCGCCACCATG
AGGAGTGCCCGTTCTCCTCGGTAAACGATCAATACGCCGCCACCGGCAGTGAAGCGCTGGAAACCGCCATTGCGGCCGCC
TACAAACAGGTGTTGGGCAATCTCGGCCCCACCGAAAGCCAGCGGTGCACCGAGCTGGAATCCCAGCTGCTGAATGGCGA
CATCAATGTGCGCGACTTCGTGGCTGGGTTGGCCAAATCAGATCTCTACAAGCAGAACTATTTCTCCACGGTCTCTCCGA
TCCGCGGCATTGAGCTGAACCTCAAGCACCTGCTGGGCCGCCCTCCGGTCAATCAAGCCGAGGTCAGCGCCTGCATCACC
TTGATTGCCGAGCATGGCTTTGATGCCTTGGTCGACAAGATCACCCAATCCGGTGAGTACTTGGAAGTGTTCGGCACCGA
CACCGTGCCCTATGCCCGGGCTTTCAAATCCGAAGCTGGCTTCTACTGCTCCACCTTCATCAACATGGGCGAGGTCTGCA
CCGGCAACGCCGCTTCAGACACAACGGTTCAAAGCCGCAGCCTGCTGGTGATGGCCCTGAACAATGCCCGCAGCCTCAGC
ACCTCTGCTGGCAGCTTCGATGTGTCGGCCTTTAGCTATTCCAAAGCCATCAAGGACCCAACATCGGGTGCCTTCCAACG
CATGTTCCAGCCCAAAACGGCCAAAACCTGGGGCTAA

Upstream 100 bases:

>100_bases
ATTGCCAGTCAAAAATTTTGTTTCAGGGCACTCAACCCCTGAGGAACTCATCAAGTAACGGGCCTAATCTCCAGCTCACA
ATTGCCCGCTCGATTCAGTA

Downstream 100 bases:

>100_bases
ACACGGCACGGCAACCCGGGGAAGGCTGGATTCAACAGCCCAAACGCCATGGCCCTGATTGGCTGGCCAACCCTCTTGAT
CCATCCCCAATGCCCGCTCT

Product: phycobilisome linker polypeptide, C-phycoerythrin class II-associated

Products: NA

Alternate protein names: L-R 32.1; Phycobilisome 32.1 kDa rod linker polypeptide; Phycoerythrin class II gamma chain, linker polypeptide [H]

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MVVIKPKRDFTSLNRVSYAASNTAKKSQAATTIAQYKHDICSNLGIGIGPRHHEECPFSSVNDQYAATGSEALETAIAAA
YKQVLGNLGPTESQRCTELESQLLNGDINVRDFVAGLAKSDLYKQNYFSTVSPIRGIELNLKHLLGRPPVNQAEVSACIT
LIAEHGFDALVDKITQSGEYLEVFGTDTVPYARAFKSEAGFYCSTFINMGEVCTGNAASDTTVQSRSLLVMALNNARSLS
TSAGSFDVSAFSYSKAIKDPTSGAFQRMFQPKTAKTWG

Sequences:

>Translated_278_residues
MVVIKPKRDFTSLNRVSYAASNTAKKSQAATTIAQYKHDICSNLGIGIGPRHHEECPFSSVNDQYAATGSEALETAIAAA
YKQVLGNLGPTESQRCTELESQLLNGDINVRDFVAGLAKSDLYKQNYFSTVSPIRGIELNLKHLLGRPPVNQAEVSACIT
LIAEHGFDALVDKITQSGEYLEVFGTDTVPYARAFKSEAGFYCSTFINMGEVCTGNAASDTTVQSRSLLVMALNNARSLS
TSAGSFDVSAFSYSKAIKDPTSGAFQRMFQPKTAKTWG
>Mature_278_residues
MVVIKPKRDFTSLNRVSYAASNTAKKSQAATTIAQYKHDICSNLGIGIGPRHHEECPFSSVNDQYAATGSEALETAIAAA
YKQVLGNLGPTESQRCTELESQLLNGDINVRDFVAGLAKSDLYKQNYFSTVSPIRGIELNLKHLLGRPPVNQAEVSACIT
LIAEHGFDALVDKITQSGEYLEVFGTDTVPYARAFKSEAGFYCSTFINMGEVCTGNAASDTTVQSRSLLVMALNNARSLS
TSAGSFDVSAFSYSKAIKDPTSGAFQRMFQPKTAKTWG

Specific function: This protein is a bile pigment-bearing rod linker polypeptide that associates with C-phycoerythrin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Periphery of the rods of the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 30009; Mature: 30009

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVIKPKRDFTSLNRVSYAASNTAKKSQAATTIAQYKHDICSNLGIGIGPRHHEECPFSS
CEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
VNDQYAATGSEALETAIAAAYKQVLGNLGPTESQRCTELESQLLNGDINVRDFVAGLAKS
CCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
DLYKQNYFSTVSPIRGIELNLKHLLGRPPVNQAEVSACITLIAEHGFDALVDKITQSGEY
HHHHHHHHHHHCCCCCCEEEHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCE
LEVFGTDTVPYARAFKSEAGFYCSTFINMGEVCTGNAASDTTVQSRSLLVMALNNARSLS
EEEECCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCC
TSAGSFDVSAFSYSKAIKDPTSGAFQRMFQPKTAKTWG
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVVIKPKRDFTSLNRVSYAASNTAKKSQAATTIAQYKHDICSNLGIGIGPRHHEECPFSS
CEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
VNDQYAATGSEALETAIAAAYKQVLGNLGPTESQRCTELESQLLNGDINVRDFVAGLAKS
CCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
DLYKQNYFSTVSPIRGIELNLKHLLGRPPVNQAEVSACITLIAEHGFDALVDKITQSGEY
HHHHHHHHHHHCCCCCCEEEHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCE
LEVFGTDTVPYARAFKSEAGFYCSTFINMGEVCTGNAASDTTVQSRSLLVMALNNARSLS
EEEECCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCC
TSAGSFDVSAFSYSKAIKDPTSGAFQRMFQPKTAKTWG
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8425055; 8419325 [H]