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The map label for this gene is 148243091

Identifier: 148243091

GI number: 148243091

Start: 1728396

End: 1729352

Strand: Direct

Name: 148243091

Synonym: SynRCC307_1992

Alternate gene names: NA

Gene position: 1728396-1729352 (Clockwise)

Preceding gene: 148243090

Following gene: 148243092

Centisome position: 77.68

GC content: 47.02

Gene sequence:

>957_bases
ATGTACACGCTTGATAAGGCCCAGCAGATTTTTCCTGAGACGCTGACGGCAGATGCTGTTCCTGCCATAACAGCTCGCTT
CAAGCAGCTCAGTGCTGAAGACCAGTTGGCGCTTATTTGGTTTGCCTACTTGGAGATGGGTAAGACCATCACGATTGCCG
CTCCAGGTGCAGCTCGGATGGCTCTTGCTGAGCCGACACTGAAGGAAATTGCCGGGATGAGCGCAGATGAACAGACAAAA
GTGATGTGCGACTTAGCCGCAAAAATCAATTCTCCAATTTCCAATCGCTATGCCTATTGGTCAGTCAACGTGAAGCTTGG
CTTCTGGTATGAGCTTGGAGAGCTCATGAGAAAAGGTGATGTTGCACCCATCCCGCCTGGCTACTCTCTTTCCTTGAACG
CCAATTCAGTCTTGGCGTCAGTGAGAAAGGCCGAGCAAGGGCAACAGATCACATTATTGCGTAATTTTGTGGTCGACATG
GGATTTGACCCAAACATTGATGACGAAAAGATTCAGTCAGAGCCAATTGTTGCTCCAACGCCAGTTGATCAGCGGGAAGA
AATTTTCATCCCTGGCATTTTGAATCAAACCATCCTTGATTACATGGTTTATCTCAACGCAAATGATTTTGATCAACTCA
TCGATCTCTTCCTTGATGATGGAGCCCTGCAGCCTCCTTTTCAACGGCCAATTGTTGGTCGAGAGGCAATCTTAAAGTTT
TTCAGAAGAGATTGCCAGAACCTAAAACTGCTGCCGCAGGGAGGCTACGGGGAGCCTGCCGAGGGAGGTTTCAATCAAAT
AAAAGTTACTGGAAAAGTTCAAACACCATGGTTTGGCCGAGAAGTGGGCATGAACGTTGCATGGAGATTTCTCCTAGATG
AGAACAACAAAATTTATTTTGTTGCCATTGACCTTCTTGCATCACCCGCTGAATTGTTGAAGCTTGGTGCAAAATGA

Upstream 100 bases:

>100_bases
TTACATCGGGCCCTGCATTTTGTCAAGCCATGAGCCGGAGTGATGTAAGGAAACTTCACTCTTGAGGTAGAGTTTCTTTA
TCGCTCTTCAGTCTGCGCAG

Downstream 100 bases:

>100_bases
TTTAAAAGCCAACAGCTTCTACGGATTAGCAATCACCCTTATTGTAGGGTTTTTATGGCTGACAACATTCGTTTCTGTTG
TTAATCTGCCATCAGAAAGT

Product: carotenoid binding protein

Products: NA

Alternate protein names: OCP; RCP [H]

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MYTLDKAQQIFPETLTADAVPAITARFKQLSAEDQLALIWFAYLEMGKTITIAAPGAARMALAEPTLKEIAGMSADEQTK
VMCDLAAKINSPISNRYAYWSVNVKLGFWYELGELMRKGDVAPIPPGYSLSLNANSVLASVRKAEQGQQITLLRNFVVDM
GFDPNIDDEKIQSEPIVAPTPVDQREEIFIPGILNQTILDYMVYLNANDFDQLIDLFLDDGALQPPFQRPIVGREAILKF
FRRDCQNLKLLPQGGYGEPAEGGFNQIKVTGKVQTPWFGREVGMNVAWRFLLDENNKIYFVAIDLLASPAELLKLGAK

Sequences:

>Translated_318_residues
MYTLDKAQQIFPETLTADAVPAITARFKQLSAEDQLALIWFAYLEMGKTITIAAPGAARMALAEPTLKEIAGMSADEQTK
VMCDLAAKINSPISNRYAYWSVNVKLGFWYELGELMRKGDVAPIPPGYSLSLNANSVLASVRKAEQGQQITLLRNFVVDM
GFDPNIDDEKIQSEPIVAPTPVDQREEIFIPGILNQTILDYMVYLNANDFDQLIDLFLDDGALQPPFQRPIVGREAILKF
FRRDCQNLKLLPQGGYGEPAEGGFNQIKVTGKVQTPWFGREVGMNVAWRFLLDENNKIYFVAIDLLASPAELLKLGAK
>Mature_318_residues
MYTLDKAQQIFPETLTADAVPAITARFKQLSAEDQLALIWFAYLEMGKTITIAAPGAARMALAEPTLKEIAGMSADEQTK
VMCDLAAKINSPISNRYAYWSVNVKLGFWYELGELMRKGDVAPIPPGYSLSLNANSVLASVRKAEQGQQITLLRNFVVDM
GFDPNIDDEKIQSEPIVAPTPVDQREEIFIPGILNQTILDYMVYLNANDFDQLIDLFLDDGALQPPFQRPIVGREAILKF
FRRDCQNLKLLPQGGYGEPAEGGFNQIKVTGKVQTPWFGREVGMNVAWRFLLDENNKIYFVAIDLLASPAELLKLGAK

Specific function: Acts as a photo-protectant. Essential for inhibiting white and blue-green light non-photochemical quenching (NPQ). Binding carotenoids improves OCP's intrinsic photoprotectant activity by broadening its absorption spectrum and facilitating the dissipation

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane. Note=Associated with the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002075
- InterPro:   IPR015233 [H]

Pfam domain/function: PF09150 Carot_N; PF02136 NTF2 [H]

EC number: NA

Molecular weight: Translated: 35411; Mature: 35411

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTLDKAQQIFPETLTADAVPAITARFKQLSAEDQLALIWFAYLEMGKTITIAAPGAARM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEEECCCCHHH
ALAEPTLKEIAGMSADEQTKVMCDLAAKINSPISNRYAYWSVNVKLGFWYELGELMRKGD
HHCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEHHHHHHHHHHCCC
VAPIPPGYSLSLNANSVLASVRKAEQGQQITLLRNFVVDMGFDPNIDDEKIQSEPIVAPT
CCCCCCCCEEEECHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCHHHHCCCCCCCCC
PVDQREEIFIPGILNQTILDYMVYLNANDFDQLIDLFLDDGALQPPFQRPIVGREAILKF
CCCCCCCEEECCHHHHHHHHHHEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
FRRDCQNLKLLPQGGYGEPAEGGFNQIKVTGKVQTPWFGREVGMNVAWRFLLDENNKIYF
HHHHHHCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCHHHCCCEEEEEEEECCCEEEE
VAIDLLASPAELLKLGAK
EEEHHHHCCHHHHHCCCC
>Mature Secondary Structure
MYTLDKAQQIFPETLTADAVPAITARFKQLSAEDQLALIWFAYLEMGKTITIAAPGAARM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEEECCCCHHH
ALAEPTLKEIAGMSADEQTKVMCDLAAKINSPISNRYAYWSVNVKLGFWYELGELMRKGD
HHCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEHHHHHHHHHHCCC
VAPIPPGYSLSLNANSVLASVRKAEQGQQITLLRNFVVDMGFDPNIDDEKIQSEPIVAPT
CCCCCCCCEEEECHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCHHHHCCCCCCCCC
PVDQREEIFIPGILNQTILDYMVYLNANDFDQLIDLFLDDGALQPPFQRPIVGREAILKF
CCCCCCCEEECCHHHHHHHHHHEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
FRRDCQNLKLLPQGGYGEPAEGGFNQIKVTGKVQTPWFGREVGMNVAWRFLLDENNKIYF
HHHHHHCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCHHHCCCEEEEEEEECCCEEEE
VAIDLLASPAELLKLGAK
EEEHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]