| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
Click here to switch to the map view.
The map label for this gene is 148243019
Identifier: 148243019
GI number: 148243019
Start: 1663183
End: 1664367
Strand: Direct
Name: 148243019
Synonym: SynRCC307_1920
Alternate gene names: NA
Gene position: 1663183-1664367 (Clockwise)
Preceding gene: 148243018
Following gene: 148243023
Centisome position: 74.75
GC content: 50.63
Gene sequence:
>1185_bases ATGCGTCGCCTGCTGTCTGCTGCTGCAAGCGCGTCACTGCTACTGGCGCAGGCGCCCGTCTTGGCAGAAGGCAGCGCTGA TGACATCGGGGTGATGAACGTCAGCCTCAAGGACAGCATCAAGCCACGCTTTGGGTTCCAAGGTCAGACGCAAGGCGCAG GTACTCCTAACGAAGCTGGCATTGGCGGCTTCTTCCCTCTGTCAGTTAGCGAGAACGGTGTCTTCTTCGTTGATGCCCTA GCCAACGCCAACTTCAGCGATTTCTCAGGCACCAGCTCAATCGTCGATACCGCGGTTGCTGGTACCACCATCAGCACCTC AACCCGTCTTGGTTACCGCTGGCTCAATACCAACCGCAGCTGGATGTTCGGCATCAATGGCGGTTACGACAGCCGCCCGA TGAACTCAGGACCAACTGTTTCAGGCATCAAAGTTGGCCGCTCCACAAGTCCGACAAACTCAGCGACATCTGCTACTGGG ACAGTTAGTAGCCAGGAGAGTTCAATCTCTGCACGCACCACAAACTCTGGTTCAACTTCTATAAAAAAGAACGTCGACAA CCATAGGTCGGTTTTCTATCAGCAAGTTGCGGCGAATATTGAGGCAGTTTCAAATAGCTGGAACTTTAATGCCTATGCGC TAGTACCCATTGGAGATACTCAACAACGATTAAACTCACATTACGATTCAGCTGCACTCGATAAATATGGAATTGATGTT GGCTACTTCATCACCCCTGAACTGAACGCTTCAGTTGGATACTATTACCAAACAGGAGACGAACCCTGCACAAAAGCAGG CGGGGCAAGCCCTGACGGGTCAGGAGTTCTCGCGAAACTAGGCTATGAACTCACAGAAGGTTTAACGCTAGGTGCTGAAT TGTCATACGATCATGCTTATGAAACACGTGTTTTAGGCAAACTCAGCCATCGATTCTCAGCAGTAAAATCAAGCAAAACA GAAAAGAAAGAGCCGTCCAATATTCCAGTGATTAAGTCGCTCACTCAAACACCATCGAATCGCAATATTGGTGTCTACGA CCCAGCTGCATGTATCCAAAAGGGAGGGCAGTGCGATCCCAAAAGTCCCCAATGCTGCAAGCATGGGCCCTCCGGGGAGC CTCTCGACTGCGGTTTGGTACTTTTTAGCGGATATTATTGCGAATGCTCCGATTGCTTCCTTTAG
Upstream 100 bases:
>100_bases GACCTCAGCAGGCGCCGCTGAACCGCAGTGGTGAAGCTGGAATACGGCTACTGACCTTTCTGAACGGGTTCGGCATCATG CGCGCAGATTTCCCGCCGCA
Downstream 100 bases:
>100_bases ACACTCAGTCATTATTTAACCGCTGAACTTCCACTTGGCGCCTGCAGGAATAGCAGGGCCTTGCTTCAGATCCTTTGGCT CCTTGTTGCTGATGCGCCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 394; Mature: 394
Protein sequence:
>394_residues MRRLLSAAASASLLLAQAPVLAEGSADDIGVMNVSLKDSIKPRFGFQGQTQGAGTPNEAGIGGFFPLSVSENGVFFVDAL ANANFSDFSGTSSIVDTAVAGTTISTSTRLGYRWLNTNRSWMFGINGGYDSRPMNSGPTVSGIKVGRSTSPTNSATSATG TVSSQESSISARTTNSGSTSIKKNVDNHRSVFYQQVAANIEAVSNSWNFNAYALVPIGDTQQRLNSHYDSAALDKYGIDV GYFITPELNASVGYYYQTGDEPCTKAGGASPDGSGVLAKLGYELTEGLTLGAELSYDHAYETRVLGKLSHRFSAVKSSKT EKKEPSNIPVIKSLTQTPSNRNIGVYDPAACIQKGGQCDPKSPQCCKHGPSGEPLDCGLVLFSGYYCECSDCFL
Sequences:
>Translated_394_residues MRRLLSAAASASLLLAQAPVLAEGSADDIGVMNVSLKDSIKPRFGFQGQTQGAGTPNEAGIGGFFPLSVSENGVFFVDAL ANANFSDFSGTSSIVDTAVAGTTISTSTRLGYRWLNTNRSWMFGINGGYDSRPMNSGPTVSGIKVGRSTSPTNSATSATG TVSSQESSISARTTNSGSTSIKKNVDNHRSVFYQQVAANIEAVSNSWNFNAYALVPIGDTQQRLNSHYDSAALDKYGIDV GYFITPELNASVGYYYQTGDEPCTKAGGASPDGSGVLAKLGYELTEGLTLGAELSYDHAYETRVLGKLSHRFSAVKSSKT EKKEPSNIPVIKSLTQTPSNRNIGVYDPAACIQKGGQCDPKSPQCCKHGPSGEPLDCGLVLFSGYYCECSDCFL >Mature_394_residues MRRLLSAAASASLLLAQAPVLAEGSADDIGVMNVSLKDSIKPRFGFQGQTQGAGTPNEAGIGGFFPLSVSENGVFFVDAL ANANFSDFSGTSSIVDTAVAGTTISTSTRLGYRWLNTNRSWMFGINGGYDSRPMNSGPTVSGIKVGRSTSPTNSATSATG TVSSQESSISARTTNSGSTSIKKNVDNHRSVFYQQVAANIEAVSNSWNFNAYALVPIGDTQQRLNSHYDSAALDKYGIDV GYFITPELNASVGYYYQTGDEPCTKAGGASPDGSGVLAKLGYELTEGLTLGAELSYDHAYETRVLGKLSHRFSAVKSSKT EKKEPSNIPVIKSLTQTPSNRNIGVYDPAACIQKGGQCDPKSPQCCKHGPSGEPLDCGLVLFSGYYCECSDCFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41584; Mature: 41584
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRLLSAAASASLLLAQAPVLAEGSADDIGVMNVSLKDSIKPRFGFQGQTQGAGTPNEAG CHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCC IGGFFPLSVSENGVFFVDALANANFSDFSGTSSIVDTAVAGTTISTSTRLGYRWLNTNRS CCCEEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCEEEECCCCC WMFGINGGYDSRPMNSGPTVSGIKVGRSTSPTNSATSATGTVSSQESSISARTTNSGSTS EEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCH IKKNVDNHRSVFYQQVAANIEAVSNSWNFNAYALVPIGDTQQRLNSHYDSAALDKYGIDV HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHCCCHHHHHHHCCCE GYFITPELNASVGYYYQTGDEPCTKAGGASPDGSGVLAKLGYELTEGLTLGAELSYDHAY EEEECCCCCCCEEEEEECCCCHHHHCCCCCCCCCCHHHHHCHHHHCCEEECCCCCCCHHH ETRVLGKLSHRFSAVKSSKTEKKEPSNIPVIKSLTQTPSNRNIGVYDPAACIQKGGQCDP HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCC KSPQCCKHGPSGEPLDCGLVLFSGYYCECSDCFL CCCHHHCCCCCCCCCEEEEEEECCEEECHHCCCC >Mature Secondary Structure MRRLLSAAASASLLLAQAPVLAEGSADDIGVMNVSLKDSIKPRFGFQGQTQGAGTPNEAG CHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCC IGGFFPLSVSENGVFFVDALANANFSDFSGTSSIVDTAVAGTTISTSTRLGYRWLNTNRS CCCEEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCEEEECCCCC WMFGINGGYDSRPMNSGPTVSGIKVGRSTSPTNSATSATGTVSSQESSISARTTNSGSTS EEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCH IKKNVDNHRSVFYQQVAANIEAVSNSWNFNAYALVPIGDTQQRLNSHYDSAALDKYGIDV HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHCCCHHHHHHHCCCE GYFITPELNASVGYYYQTGDEPCTKAGGASPDGSGVLAKLGYELTEGLTLGAELSYDHAY EEEECCCCCCCEEEEEECCCCHHHHCCCCCCCCCCHHHHHCHHHHCCEEECCCCCCCHHH ETRVLGKLSHRFSAVKSSKTEKKEPSNIPVIKSLTQTPSNRNIGVYDPAACIQKGGQCDP HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCC KSPQCCKHGPSGEPLDCGLVLFSGYYCECSDCFL CCCHHHCCCCCCCCCEEEEEEECCEEECHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA