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The map label for this gene is ymfC [C]

Identifier: 148242785

GI number: 148242785

Start: 1473511

End: 1474128

Strand: Direct

Name: ymfC [C]

Synonym: SynRCC307_1686

Alternate gene names: 148242785

Gene position: 1473511-1474128 (Clockwise)

Preceding gene: 148242782

Following gene: 148242790

Centisome position: 66.23

GC content: 63.59

Gene sequence:

>618_bases
ATGAAATCCAAAGCTCAGCCTTCACTGCTGCTTCACAAGCCCTACGGGGTGTTGAGCCAATTCACGCCTGAAGTAGGCAG
CCGTTGGGACTGCCTGGCCTCCTTGGTGCCGATCAAAGGCGTCTATGCCGCTGGGCGTTTGGATGCCGATAGCGAGGGGC
TGCTGCTGCTCACCAGCGACGGAGCGTTGCAGCATCAACTCACCAATCCACGCTTTGGCCACTGGCGCCAATACCGGGCC
CAAGTGGAAGGGGCGCCCACAGAAGCTGATCTCGAACCGCTCAGACGGGGCATCCAGCTCAAAGACGGTCCCAGCCGCCC
GGCACGGGCCCAATTGCTGGATCCATCAGTCGCTGCGGGCATCGCTGAGCGCAATCCCCCCATCCGCCACCGGCTCAGCG
TGCCCACCCGTTGGTTGGAACTGGAGCTCACCGAGGGCCGCAACCGTCAGGTACGGCGGATGACCGCAGCCATTGGCTTT
CCCACGCTGCGGCTGATCCGCTGGAGCCTGGATCTGATGGACGGCCAGCCGCCGCTGAACCTTGATGGCATGGAGCCAGG
CCAGTGGCGCTGGGTATCAGCCGCCGAGGAGAAACGGCTCAAGCAACTGGGCCGTTAG

Upstream 100 bases:

>100_bases
ACTGCAACAAACCGTCTATCAATAACAGCGACGGATCGAAAACAAGCTGAAAAGATGGAAGCAGAGCTGACACCCCCCCT
CAGCACGCCATGCATTGGCA

Downstream 100 bases:

>100_bases
CCCAGCACGTCTTGCAGCTCACGCACGGTCATCAATTGGCCGTAGTAGTAGTTCGCCTGGGCGCGGGCAGCTGGATCCTC
CAAGCCATCGATGGCGTCAG

Product: pseudouridine synthase

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MKSKAQPSLLLHKPYGVLSQFTPEVGSRWDCLASLVPIKGVYAAGRLDADSEGLLLLTSDGALQHQLTNPRFGHWRQYRA
QVEGAPTEADLEPLRRGIQLKDGPSRPARAQLLDPSVAAGIAERNPPIRHRLSVPTRWLELELTEGRNRQVRRMTAAIGF
PTLRLIRWSLDLMDGQPPLNLDGMEPGQWRWVSAAEEKRLKQLGR

Sequences:

>Translated_205_residues
MKSKAQPSLLLHKPYGVLSQFTPEVGSRWDCLASLVPIKGVYAAGRLDADSEGLLLLTSDGALQHQLTNPRFGHWRQYRA
QVEGAPTEADLEPLRRGIQLKDGPSRPARAQLLDPSVAAGIAERNPPIRHRLSVPTRWLELELTEGRNRQVRRMTAAIGF
PTLRLIRWSLDLMDGQPPLNLDGMEPGQWRWVSAAEEKRLKQLGR
>Mature_205_residues
MKSKAQPSLLLHKPYGVLSQFTPEVGSRWDCLASLVPIKGVYAAGRLDADSEGLLLLTSDGALQHQLTNPRFGHWRQYRA
QVEGAPTEADLEPLRRGIQLKDGPSRPARAQLLDPSVAAGIAERNPPIRHRLSVPTRWLELELTEGRNRQVRRMTAAIGF
PTLRLIRWSLDLMDGQPPLNLDGMEPGQWRWVSAAEEKRLKQLGR

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pseudouridine synthase rsuA family [H]

Homologues:

Organism=Escherichia coli, GI87081838, Length=194, Percent_Identity=52.5773195876289, Blast_Score=184, Evalue=2e-48,
Organism=Escherichia coli, GI1787524, Length=198, Percent_Identity=34.8484848484849, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1788510, Length=191, Percent_Identity=29.3193717277487, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1790453, Length=188, Percent_Identity=26.063829787234, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496 [H]

Pfam domain/function: PF00849 PseudoU_synth_2 [H]

EC number: NA

Molecular weight: Translated: 22991; Mature: 22991

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKAQPSLLLHKPYGVLSQFTPEVGSRWDCLASLVPIKGVYAAGRLDADSEGLLLLTSD
CCCCCCCCEEEECCHHHHHHHCHHHCCHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECC
GALQHQLTNPRFGHWRQYRAQVEGAPTEADLEPLRRGIQLKDGPSRPARAQLLDPSVAAG
CCHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHCCCHHHHH
IAERNPPIRHRLSVPTRWLELELTEGRNRQVRRMTAAIGFPTLRLIRWSLDLMDGQPPLN
HHHCCCCCEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCC
LDGMEPGQWRWVSAAEEKRLKQLGR
CCCCCCCCEEEECHHHHHHHHHHCC
>Mature Secondary Structure
MKSKAQPSLLLHKPYGVLSQFTPEVGSRWDCLASLVPIKGVYAAGRLDADSEGLLLLTSD
CCCCCCCCEEEECCHHHHHHHCHHHCCHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECC
GALQHQLTNPRFGHWRQYRAQVEGAPTEADLEPLRRGIQLKDGPSRPARAQLLDPSVAAG
CCHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHCCCHHHHH
IAERNPPIRHRLSVPTRWLELELTEGRNRQVRRMTAAIGFPTLRLIRWSLDLMDGQPPLN
HHHCCCCCEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCC
LDGMEPGQWRWVSAAEEKRLKQLGR
CCCCCCCCEEEECHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]