| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
Click here to switch to the map view.
The map label for this gene is actII-2 [H]
Identifier: 148242609
GI number: 148242609
Start: 1343533
End: 1345107
Strand: Direct
Name: actII-2 [H]
Synonym: SynRCC307_1510
Alternate gene names: 148242609
Gene position: 1343533-1345107 (Clockwise)
Preceding gene: 148242608
Following gene: 148242611
Centisome position: 60.39
GC content: 59.81
Gene sequence:
>1575_bases ATGAAGAAGTGGCTCCCAATCCTGGTGCTGGGGCTCACCCAATTCGTCATGGTGCTGGATGGCACGGTGATGAATGTCTC CATCACCGACGTGGTGGGTGATCTGGGCACAACCACCAGCAACATGCAGCTGGCCATCGCCACTTTCACGCTGACGATGG CGGCGTTGATGCTGGCCGGCGCTGGTCTTGGCACGCGCCTTGGACTGCGGCGCACCTTTGTGATTGGCAATGTCATCTAT GCCATCGGTTCTTTAACCACCGCCTTCGCCCCTGGCTTTGCTGCCCTGTTTATCGGCTGGTCGCTAGTGGAAGGTTTAGG GGCTGCCCTGGTGGTGCCGGCCATCGCAGCCCTGGCGGCTGTGAATTACAGCGGCCGTGAGCGGGCTATGGCCTATGCCG TGCTCGGCGGCATTGCTGGAGCTGCTTCAGCCGCAGGCCCCCTGATTGGCGGTTGGATGACCACCTACCTCTCCTGGCGG TGGGTCTTTGGCTTGGAGACGTTGATCATCTTGCTGTTGGTGCTGCCCCTGCATCGGCGCATCGTTGACCAGCGCCCAAC GGCGATTCAAGGGAGATTTGATTGGCTTGGGGTGCTGCTTTCAGCGCTCTCGATGGGATTGATCGTGCTGGCTTTGGTCT CCGCCAGCACCTGGGGCTTGATTCAACCGATCAATCCACCGTTCACGCTGTGGGGATTCTCACCAACAATGCCCATGGTG GTGGTGGGAGCGATGGTGGCCTGGGGCTTCATCAGTTGGCAGGAGCACTTGCAAACCCATGGCGGCGCCCCCTTGGTGGG ACTGGATCTGCTGAGCCTGCCCAGCTTGCGTGCTGGCTTGGCTTCGCAACTGGTGCTGTATTTCATCGTGGCGGGAACGT TCTTTGTGATCCCGCTGTATCTGCAAACCGTGCTCGAGCTCAACGCACTGGAGTCGGGCATTCGCATGCTGCCGATGTCG GTGTGCCTGTTTTTGGTGGCCCTGATTGGCTCAAAGCTGGCCAGCCGTCGTTCACCACGGCAATTGATCCGCTCGGGTCT GTTGATCGCCTGCGGGGGCCTGGTGTTGATGATCAGCGCCATTCGCCCTCAAGCCGACAGCATGCTGTTCACCTTGGCCA TGGCCTCGATCGGCATTGGCATCGGCCTGGCCATCTCCCAGATCGGCAACGTCAACCTTTCGTCCGCTGATCAAACCCGC AGCACCGAAATCGGTGGCATGCAGGGCACGGCTCAAAACCTTGGTGCCTCCCTCGGTGTTGCCATCGCTGGTACGGCCCT GTTCATTGCCCTCGGCAACCAGCTCACCACCACGGTCAACAACAATCCTTTGATCAATCCAGTGCTTAAGCAGGCCACTG AAGCGGCCCAAAAGGAGGGGATTCAGGTGGTGACGCCGGAACTGCTGAACAGTCATTTGCAGAAGGCCGGCGTTCCCAGC GACCAAATTCAGCTCATCTCAGATGACTACACCAGCAGCAAGTTGCAGGCCCTTCGGCTTGGCCTGGGCTATGTGTTGGT GGTCGCGTTGCTGGGCCTTCCCCTCACGCGCGGGTTGCCACGTCAACCGCTTTAA
Upstream 100 bases:
>100_bases GCTGGAGCCATCACCTTGGTCACCGCGCTGTGGTTCACCCCGGAGAGCTGCCGGCTGCCCTTGCAACGTTTATGACAAAG AAGCGGCCAGTGAGCCTTCC
Downstream 100 bases:
>100_bases GGCAGCGCACGATCGACGATGTCGCGAATTTCACCGACCCGGTGCATCGACATCACTGTGACATTGATGGGCTTCCTCAA GGGGCTGCCTGAACGCACAG
Product: major facilitator superfamily permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 524; Mature: 524
Protein sequence:
>524_residues MKKWLPILVLGLTQFVMVLDGTVMNVSITDVVGDLGTTTSNMQLAIATFTLTMAALMLAGAGLGTRLGLRRTFVIGNVIY AIGSLTTAFAPGFAALFIGWSLVEGLGAALVVPAIAALAAVNYSGRERAMAYAVLGGIAGAASAAGPLIGGWMTTYLSWR WVFGLETLIILLLVLPLHRRIVDQRPTAIQGRFDWLGVLLSALSMGLIVLALVSASTWGLIQPINPPFTLWGFSPTMPMV VVGAMVAWGFISWQEHLQTHGGAPLVGLDLLSLPSLRAGLASQLVLYFIVAGTFFVIPLYLQTVLELNALESGIRMLPMS VCLFLVALIGSKLASRRSPRQLIRSGLLIACGGLVLMISAIRPQADSMLFTLAMASIGIGIGLAISQIGNVNLSSADQTR STEIGGMQGTAQNLGASLGVAIAGTALFIALGNQLTTTVNNNPLINPVLKQATEAAQKEGIQVVTPELLNSHLQKAGVPS DQIQLISDDYTSSKLQALRLGLGYVLVVALLGLPLTRGLPRQPL
Sequences:
>Translated_524_residues MKKWLPILVLGLTQFVMVLDGTVMNVSITDVVGDLGTTTSNMQLAIATFTLTMAALMLAGAGLGTRLGLRRTFVIGNVIY AIGSLTTAFAPGFAALFIGWSLVEGLGAALVVPAIAALAAVNYSGRERAMAYAVLGGIAGAASAAGPLIGGWMTTYLSWR WVFGLETLIILLLVLPLHRRIVDQRPTAIQGRFDWLGVLLSALSMGLIVLALVSASTWGLIQPINPPFTLWGFSPTMPMV VVGAMVAWGFISWQEHLQTHGGAPLVGLDLLSLPSLRAGLASQLVLYFIVAGTFFVIPLYLQTVLELNALESGIRMLPMS VCLFLVALIGSKLASRRSPRQLIRSGLLIACGGLVLMISAIRPQADSMLFTLAMASIGIGIGLAISQIGNVNLSSADQTR STEIGGMQGTAQNLGASLGVAIAGTALFIALGNQLTTTVNNNPLINPVLKQATEAAQKEGIQVVTPELLNSHLQKAGVPS DQIQLISDDYTSSKLQALRLGLGYVLVVALLGLPLTRGLPRQPL >Mature_524_residues MKKWLPILVLGLTQFVMVLDGTVMNVSITDVVGDLGTTTSNMQLAIATFTLTMAALMLAGAGLGTRLGLRRTFVIGNVIY AIGSLTTAFAPGFAALFIGWSLVEGLGAALVVPAIAALAAVNYSGRERAMAYAVLGGIAGAASAAGPLIGGWMTTYLSWR WVFGLETLIILLLVLPLHRRIVDQRPTAIQGRFDWLGVLLSALSMGLIVLALVSASTWGLIQPINPPFTLWGFSPTMPMV VVGAMVAWGFISWQEHLQTHGGAPLVGLDLLSLPSLRAGLASQLVLYFIVAGTFFVIPLYLQTVLELNALESGIRMLPMS VCLFLVALIGSKLASRRSPRQLIRSGLLIACGGLVLMISAIRPQADSMLFTLAMASIGIGIGLAISQIGNVNLSSADQTR STEIGGMQGTAQNLGASLGVAIAGTALFIALGNQLTTTVNNNPLINPVLKQATEAAQKEGIQVVTPELLNSHLQKAGVPS DQIQLISDDYTSSKLQALRLGLGYVLVVALLGLPLTRGLPRQPL
Specific function: Promotes the efflux of actinorhodin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. EmrB family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=405, Percent_Identity=26.6666666666667, Blast_Score=101, Evalue=2e-22, Organism=Escherichia coli, GI1790195, Length=430, Percent_Identity=23.7209302325581, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1788710, Length=466, Percent_Identity=21.4592274678112, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1789042, Length=419, Percent_Identity=21.4797136038186, Blast_Score=73, Evalue=5e-14, Organism=Escherichia coli, GI1788392, Length=418, Percent_Identity=24.6411483253589, Blast_Score=66, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004638 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 55095; Mature: 55095
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKWLPILVLGLTQFVMVLDGTVMNVSITDVVGDLGTTTSNMQLAIATFTLTMAALMLAG CCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHC AGLGTRLGLRRTFVIGNVIYAIGSLTTAFAPGFAALFIGWSLVEGLGAALVVPAIAALAA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNYSGRERAMAYAVLGGIAGAASAAGPLIGGWMTTYLSWRWVFGLETLIILLLVLPLHRR HCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IVDQRPTAIQGRFDWLGVLLSALSMGLIVLALVSASTWGLIQPINPPFTLWGFSPTMPMV HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHH VVGAMVAWGFISWQEHLQTHGGAPLVGLDLLSLPSLRAGLASQLVLYFIVAGTFFVIPLY HHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH LQTVLELNALESGIRMLPMSVCLFLVALIGSKLASRRSPRQLIRSGLLIACGGLVLMISA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHH IRPQADSMLFTLAMASIGIGIGLAISQIGNVNLSSADQTRSTEIGGMQGTAQNLGASLGV HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHH AIAGTALFIALGNQLTTTVNNNPLINPVLKQATEAAQKEGIQVVTPELLNSHLQKAGVPS HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHHHCCCCC DQIQLISDDYTSSKLQALRLGLGYVLVVALLGLPLTRGLPRQPL HHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCC >Mature Secondary Structure MKKWLPILVLGLTQFVMVLDGTVMNVSITDVVGDLGTTTSNMQLAIATFTLTMAALMLAG CCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHC AGLGTRLGLRRTFVIGNVIYAIGSLTTAFAPGFAALFIGWSLVEGLGAALVVPAIAALAA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNYSGRERAMAYAVLGGIAGAASAAGPLIGGWMTTYLSWRWVFGLETLIILLLVLPLHRR HCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IVDQRPTAIQGRFDWLGVLLSALSMGLIVLALVSASTWGLIQPINPPFTLWGFSPTMPMV HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHH VVGAMVAWGFISWQEHLQTHGGAPLVGLDLLSLPSLRAGLASQLVLYFIVAGTFFVIPLY HHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH LQTVLELNALESGIRMLPMSVCLFLVALIGSKLASRRSPRQLIRSGLLIACGGLVLMISA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHH IRPQADSMLFTLAMASIGIGIGLAISQIGNVNLSSADQTRSTEIGGMQGTAQNLGASLGV HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHH AIAGTALFIALGNQLTTTVNNNPLINPVLKQATEAAQKEGIQVVTPELLNSHLQKAGVPS HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHHHCCCCC DQIQLISDDYTSSKLQALRLGLGYVLVVALLGLPLTRGLPRQPL HHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1878971; 12000953 [H]