| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
Click here to switch to the map view.
The map label for this gene is 148242604
Identifier: 148242604
GI number: 148242604
Start: 1339057
End: 1340217
Strand: Direct
Name: 148242604
Synonym: SynRCC307_1505
Alternate gene names: NA
Gene position: 1339057-1340217 (Clockwise)
Preceding gene: 148242600
Following gene: 148242605
Centisome position: 60.18
GC content: 63.74
Gene sequence:
>1161_bases ATGGCGCAGGCCCACCAACCATTGACAGCTGCGGAGGTCAGCGAGCTATTCCCAGCCGCCACACCCCACAGCAACATTGC GCGCTACTGGCCCTACATCAGCTCGGCCCTTCAGGAGGAGGGCATCGGCGATCGAGCCATGGCCTTGCTGGCGTTGGCCA CGATCCGGGCCGAAAGCGAAGGCTTTGAGCCGATTGATGAGCACCCATCCACATGGAACACGGCTCCCGGCGGCCATCCC TACGGGCTTTACGACGAACGCCGTGATTTGGGCAACCTCGGCTCTGGCGATGGTGAAGCTTTTCGCGGCCGCGGCTTTGT GCAACTCACCGGACGGGATAACTACGCCCGCTATGGCGAACAAATTGGCGTTGATCTGCTGAAGCGCCCAGAACTAGCCA ATGACCCAGAAGTGGCCGCCCACCTTCTAGCCCGCTTCCTCAAAGAGCGTGAGGGACCGCTACGCCATGCCCTTGCCAGT AACAACTTGGCTGCCGCCAGACGCCTGGTGAATGGAGGGCAGCATGGACTGAATCGCTTCAGCGACACCATTCGCCGCGG CCAGCCAGTCACCGTGGCAGGCACCAGCAGCGCCTGCGACACCGGAGCCATTGCCGGACTCTCTCAGCAGGTGTTGGATC GCCTCGAAACGCAGGGCGCCTTGGTGGCCATTGCGCACCCTCTGATCCAACTGGAGGGCGCCCACAACAACCCCTGGCTG CAACCCCAGGCAGCCGAGGCTCTGATCGCTGCCGTTGAAGAGCGCGGCGAACCCTTGGTGATCAACAGCGCCCTGCGCAC GCCCATGCAGCAGCACCTGATTCACCAACAAGCGCAGCGGGGCGAATGCGGCATTCAGGCGGCAGCACCTCCCCCGTTCA GCAACCACAACAGCGGCCTCGCCATCGACATTGAAGATTCCAGCGGGTGGCGCCCCTATCTCGAGCGGCACGGCTGGCAA TGGCTCGGGGCCTGGGACCCGATGCACTTTGACTACACAGGTGGAGGCGTGGACCTTGGGGGCGCCCAGGTGCTGGCCTT CCAGGAGCTCTGGAATGAGCACAACCCCGAAGCCCCCCTCGTCGAAGACGGACTGTGGGGACCAGCCACAGCCGCCGCTG TGGAACGCTCACCGGCAGCAGGGTTTCCCTTCAAGGCATGA
Upstream 100 bases:
>100_bases CAGGGGAGCGCCCTTCCCGCTGTTGAGCTGAGCGAATCAACGGCCGCCAAGGTGGCAAGGGCAAGGCCATGGCTACACCA GATAGGTCGATCACTGCACC
Downstream 100 bases:
>100_bases GCACTGGCTTTGGGCCCAAGGGCTATTGGGATCAGCGTTTCGCCAGCGCGGGCTTTGTCTATGGGGAGCAGCCCAACGAT TTCCTCAACGAGCACGCCTC
Product: chitinase-like domain-containing protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Chitinase; Chitinase-Like Domain-Containing Protein; D-Alanyl-D-Alanine Carboxypeptidase Family; Phage Encoded Lysozyme
Number of amino acids: Translated: 386; Mature: 385
Protein sequence:
>386_residues MAQAHQPLTAAEVSELFPAATPHSNIARYWPYISSALQEEGIGDRAMALLALATIRAESEGFEPIDEHPSTWNTAPGGHP YGLYDERRDLGNLGSGDGEAFRGRGFVQLTGRDNYARYGEQIGVDLLKRPELANDPEVAAHLLARFLKEREGPLRHALAS NNLAAARRLVNGGQHGLNRFSDTIRRGQPVTVAGTSSACDTGAIAGLSQQVLDRLETQGALVAIAHPLIQLEGAHNNPWL QPQAAEALIAAVEERGEPLVINSALRTPMQQHLIHQQAQRGECGIQAAAPPPFSNHNSGLAIDIEDSSGWRPYLERHGWQ WLGAWDPMHFDYTGGGVDLGGAQVLAFQELWNEHNPEAPLVEDGLWGPATAAAVERSPAAGFPFKA
Sequences:
>Translated_386_residues MAQAHQPLTAAEVSELFPAATPHSNIARYWPYISSALQEEGIGDRAMALLALATIRAESEGFEPIDEHPSTWNTAPGGHP YGLYDERRDLGNLGSGDGEAFRGRGFVQLTGRDNYARYGEQIGVDLLKRPELANDPEVAAHLLARFLKEREGPLRHALAS NNLAAARRLVNGGQHGLNRFSDTIRRGQPVTVAGTSSACDTGAIAGLSQQVLDRLETQGALVAIAHPLIQLEGAHNNPWL QPQAAEALIAAVEERGEPLVINSALRTPMQQHLIHQQAQRGECGIQAAAPPPFSNHNSGLAIDIEDSSGWRPYLERHGWQ WLGAWDPMHFDYTGGGVDLGGAQVLAFQELWNEHNPEAPLVEDGLWGPATAAAVERSPAAGFPFKA >Mature_385_residues AQAHQPLTAAEVSELFPAATPHSNIARYWPYISSALQEEGIGDRAMALLALATIRAESEGFEPIDEHPSTWNTAPGGHPY GLYDERRDLGNLGSGDGEAFRGRGFVQLTGRDNYARYGEQIGVDLLKRPELANDPEVAAHLLARFLKEREGPLRHALASN NLAAARRLVNGGQHGLNRFSDTIRRGQPVTVAGTSSACDTGAIAGLSQQVLDRLETQGALVAIAHPLIQLEGAHNNPWLQ PQAAEALIAAVEERGEPLVINSALRTPMQQHLIHQQAQRGECGIQAAAPPPFSNHNSGLAIDIEDSSGWRPYLERHGWQW LGAWDPMHFDYTGGGVDLGGAQVLAFQELWNEHNPEAPLVEDGLWGPATAAAVERSPAAGFPFKA
Specific function: Unknown
COG id: COG3179
COG function: function code R; Predicted chitinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41662; Mature: 41531
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQAHQPLTAAEVSELFPAATPHSNIARYWPYISSALQEEGIGDRAMALLALATIRAESE CCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC GFEPIDEHPSTWNTAPGGHPYGLYDERRDLGNLGSGDGEAFRGRGFVQLTGRDNYARYGE CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEECCCCEEEECCCCCHHHHHH QIGVDLLKRPELANDPEVAAHLLARFLKEREGPLRHALASNNLAAARRLVNGGQHGLNRF HHCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHH SDTIRRGQPVTVAGTSSACDTGAIAGLSQQVLDRLETQGALVAIAHPLIQLEGAHNNPWL HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECHHHEEECCCCCCCC QPQAAEALIAAVEERGEPLVINSALRTPMQQHLIHQQAQRGECGIQAAAPPPFSNHNSGL CHHHHHHHHHHHHHCCCCEEEEHHHHCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCE AIDIEDSSGWRPYLERHGWQWLGAWDPMHFDYTGGGVDLGGAQVLAFQELWNEHNPEAPL EEEECCCCCCCHHHHHCCCEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCC VEDGLWGPATAAAVERSPAAGFPFKA CCCCCCCCHHHHHHHCCCCCCCCCCC >Mature Secondary Structure AQAHQPLTAAEVSELFPAATPHSNIARYWPYISSALQEEGIGDRAMALLALATIRAESE CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC GFEPIDEHPSTWNTAPGGHPYGLYDERRDLGNLGSGDGEAFRGRGFVQLTGRDNYARYGE CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEECCCCEEEECCCCCHHHHHH QIGVDLLKRPELANDPEVAAHLLARFLKEREGPLRHALASNNLAAARRLVNGGQHGLNRF HHCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHH SDTIRRGQPVTVAGTSSACDTGAIAGLSQQVLDRLETQGALVAIAHPLIQLEGAHNNPWL HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECHHHEEECCCCCCCC QPQAAEALIAAVEERGEPLVINSALRTPMQQHLIHQQAQRGECGIQAAAPPPFSNHNSGL CHHHHHHHHHHHHHCCCCEEEEHHHHCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCE AIDIEDSSGWRPYLERHGWQWLGAWDPMHFDYTGGGVDLGGAQVLAFQELWNEHNPEAPL EEEECCCCCCCHHHHHCCCEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCC VEDGLWGPATAAAVERSPAAGFPFKA CCCCCCCCHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA