| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148242591
Identifier: 148242591
GI number: 148242591
Start: 1327927
End: 1330692
Strand: Direct
Name: 148242591
Synonym: SynRCC307_1492
Alternate gene names: NA
Gene position: 1327927-1330692 (Clockwise)
Preceding gene: 148242588
Following gene: 148242593
Centisome position: 59.68
GC content: 62.0
Gene sequence:
>2766_bases ATGAAACGTTTGAGCCGTCCCGCTGTGCTGCTGGCCATCGCCGCCGCGGCGATGGTGTTGGTCGTGCTGCCGCGGTTGTG GATTGAACTGCAGTGGTTTCAACAATTTGAACTGGGGCCCGTGGTGCTCAAGCGCTGGGGCTTGCAATTTCTTGCCCTGG CGCTGGTGCTGGGGATCGGCATCCCAGTGCAACTCAATCAGTTGCAACGCTGCTGGAAGCTGCGCCGGCGTGACCAGGCC TACCGCGGCGAAAGCATGTTCATGCCCCTTCGCAGCTGGGGCTTACTGGTATCACTGGTGATCGCGCTCGGCCTGCTGAG CACCGCCACCTCTTATTTATTTGTGCAGGCCCTCGGGCTGCTGCAAGAGCCGTTCAGCGGCATTGTCCTGAGCAGCTTCC CGGTGCTGGGGTCACTGCCACTGCCACTGGTGCTGGGCATTGCAGCGGTGTTGTTGGTGTTTCTGCTGCGGTGGCCGCTG ACCACCTTGAGAATCAGCCTCAGCCTGTCGATCCTGGCCTCAGCAACGGCCCTGGCTCGGGCCTGGAGCTTCTGGTTGCC GGCGATCTTGGCATCGCCGTTTGGCGAAGGCGACCCGGTCACCGGCATTGACCTCAGCTTCACAGTGCTGCGCTTACCGG CCTTCCAGTTGGTGCTCAGCGTGCTGATGGCCCAAGGCCTGGTCGGCTTAAGCGCCTGCTTTTGGTTGTGCCTCAGCCAA GGCAACACCTTGAGCGACTGGCGCTTCGCTGGTTTCAACCGTCAACAGCAAGCGGTGCTGCGGCCGCAGCTGGCGGTGCT GGCCCTGGTGGCCGCACTGATGGCCTCCCTGGCGCCGTTTGAACTCATGGTGCAAAGCCATGGCGTGGTGGCTGGTGCCG GCTGGGTGGATTTGCACTTGCGGCTGCCGCTGAGGCTTCTGCTCAGCCTGGTGCTGCTCACGATGCTGTTCAGCTTGCTG CTGCCACTGCCGCAGCGGCGGCGCCTGCTGTTGCCGGTGTCGATCACGGCACTGCTGTTGCCGATCGCGGAAGTCATCGC CGCACCCCTGGTGCAGAAATTGCTGGTGCAGCCGCGGGAACTGCAGATGGAGCGCCCCTATCTCAAACGCATGATCCAAG GCACACGGCAAGCCTTTGATCTCAACAGGATGCGGGTGAGCACGCTCAACCCCAGACAACAACTGACCGCTGCCGATCTC GAGCAGTCCCCCGGCACGATCGACAACATCCGCCTTTGGGACACCCAACCGTTGCTGGAAGCCAACGCCCAGCTGCAACA ACTGCGGCTGGTCTACGACTTCTGGTCTGCTGCCGTTGACCGCTACCAACTCAGCGACGACCTCAGCCAAGGCCGGCAAC AGGTGATGGTGGCGGCCCGGGAAATTGATATCACGGCACTGCCCGCGACCTCCCGGACCTGGCTGAACCAACACCTTGTG TTCACCCATGGTTTTGGCTTCACCGTCTCACCGGTCAACAGCTGGGGCCCCGACGGACTACCGGAGTACTTCGTCAAAGA TCTGGGGCGCAACAGCGTGGTTCAGGGGTTGCCCAACCTGGGTGTCACCACAGCCCAGGCCGTTGCAGCCTTTCCGATTG GCAAACCAGAGCTTTATTACGGCGCCTCGCCATCGCTCTATGCCGTGGCACCCAGCAAGGTGCGCGAGTTCAACTACCCC GATGGGGAAGAGAACCTCTATTCGCACTACAGCGGTGACGGCGGCCTCCCCATTGGCCATCCGTTGCAGCGGCTTCTGGC TGCAGCCTATTTGAGAGAACCACGGCTGCTGTTTGACGGCTCACTGCGGCACGACAGCCGCCTGCTGTTGCGGCGCCAAG TTCAAGAGCGGCTCGACGCCATTGCCCCCTTCCTCACCTTTGAAAGCCAGCCCTACCTCGTCACCGCGCGGGTTCCCGCC GTGGATGGCTACCGGGCTGAGCAGCACCAGTACTGGTTGCTCGATGGCTTCACCAGCAGCCGCTCCTACCCCTACAGCGC CGCCAACCCCAGCGGCATCCGTTACTTCCGCAACCCGGTCAAGGTGGTGGTGGATGCCCTCAACGGCCGTGTCTGGATCT ACGTGATGGATCCCGGTGACCCGGTGCTGCGCACATGGCGCAATGCCTTCCCGGAGATGTTCCGGTCGTTGGAGTCGATG CCGCTGGCGCTGCGCGATCACCTGCTGGTTCCCAAAACCCAGTTCCAAGTTCAGGCCGAACGCTTGCTGCGCTTTCACGT CACCGATGTGCGCAGCTTCTACAACGGCGACGACGTTTGGGGCATTCCCAAGGAGATCTATGGCTCCAAGCAAGTGGAGG TCAGGCCGTACCACGTCACCATGCAATTGCCGGGCAAAGACACCCCGGAATTTGTGTTGCTGCTGCCTTTCACCCCCCTG CGGCGGCCCAACATGGTGAGCTGGCTGGCGGCGCGCAACACCGTTGCCGATTACGGCCAACTGCGGCTGTGGCGTTTCCC GCAGCAACGCCTGCTGCTGGGCCCACAGCAGATCTCCGCCTTAATCGAACAGGATCCTGAAATCAGCCGTCAATTCGGTC TTTGGAACCGAGAGGGCTCGCGCGTGTTGCAGGGCAACCTGCTGGTGATTCCCTTGGGCAAGGGACTGCTCTATGTCGAA CCGATTTATCTGCAGGCCCGCAACGGCGGCATTCCCACCTTGGTGAAGGTGATCGTCACCGATGGTCGCCGATTTGTGAT GGAGGACGATCTCAACAGCGCCCTGCGAAAGCTGGTGGCCTCGTAG
Upstream 100 bases:
>100_bases AAACCGTAGCAGCGCCAAGCTCGGCTCCTGGTTAATCCCGACTCTCACCATCGGGCTTAGCTGATCATGCCAGATCGCAC GTGCTGACTAGCCTCTGCCC
Downstream 100 bases:
>100_bases GCACAAAAAAAGGGCCCCGCAGGGCCCCTTCGATGCGTTGAACGTCTAACGCTGAATCAGGCAGCAACAGCAACCTTGCT GTCCAGGGCGCCTTTGGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 921; Mature: 921
Protein sequence:
>921_residues MKRLSRPAVLLAIAAAAMVLVVLPRLWIELQWFQQFELGPVVLKRWGLQFLALALVLGIGIPVQLNQLQRCWKLRRRDQA YRGESMFMPLRSWGLLVSLVIALGLLSTATSYLFVQALGLLQEPFSGIVLSSFPVLGSLPLPLVLGIAAVLLVFLLRWPL TTLRISLSLSILASATALARAWSFWLPAILASPFGEGDPVTGIDLSFTVLRLPAFQLVLSVLMAQGLVGLSACFWLCLSQ GNTLSDWRFAGFNRQQQAVLRPQLAVLALVAALMASLAPFELMVQSHGVVAGAGWVDLHLRLPLRLLLSLVLLTMLFSLL LPLPQRRRLLLPVSITALLLPIAEVIAAPLVQKLLVQPRELQMERPYLKRMIQGTRQAFDLNRMRVSTLNPRQQLTAADL EQSPGTIDNIRLWDTQPLLEANAQLQQLRLVYDFWSAAVDRYQLSDDLSQGRQQVMVAAREIDITALPATSRTWLNQHLV FTHGFGFTVSPVNSWGPDGLPEYFVKDLGRNSVVQGLPNLGVTTAQAVAAFPIGKPELYYGASPSLYAVAPSKVREFNYP DGEENLYSHYSGDGGLPIGHPLQRLLAAAYLREPRLLFDGSLRHDSRLLLRRQVQERLDAIAPFLTFESQPYLVTARVPA VDGYRAEQHQYWLLDGFTSSRSYPYSAANPSGIRYFRNPVKVVVDALNGRVWIYVMDPGDPVLRTWRNAFPEMFRSLESM PLALRDHLLVPKTQFQVQAERLLRFHVTDVRSFYNGDDVWGIPKEIYGSKQVEVRPYHVTMQLPGKDTPEFVLLLPFTPL RRPNMVSWLAARNTVADYGQLRLWRFPQQRLLLGPQQISALIEQDPEISRQFGLWNREGSRVLQGNLLVIPLGKGLLYVE PIYLQARNGGIPTLVKVIVTDGRRFVMEDDLNSALRKLVAS
Sequences:
>Translated_921_residues MKRLSRPAVLLAIAAAAMVLVVLPRLWIELQWFQQFELGPVVLKRWGLQFLALALVLGIGIPVQLNQLQRCWKLRRRDQA YRGESMFMPLRSWGLLVSLVIALGLLSTATSYLFVQALGLLQEPFSGIVLSSFPVLGSLPLPLVLGIAAVLLVFLLRWPL TTLRISLSLSILASATALARAWSFWLPAILASPFGEGDPVTGIDLSFTVLRLPAFQLVLSVLMAQGLVGLSACFWLCLSQ GNTLSDWRFAGFNRQQQAVLRPQLAVLALVAALMASLAPFELMVQSHGVVAGAGWVDLHLRLPLRLLLSLVLLTMLFSLL LPLPQRRRLLLPVSITALLLPIAEVIAAPLVQKLLVQPRELQMERPYLKRMIQGTRQAFDLNRMRVSTLNPRQQLTAADL EQSPGTIDNIRLWDTQPLLEANAQLQQLRLVYDFWSAAVDRYQLSDDLSQGRQQVMVAAREIDITALPATSRTWLNQHLV FTHGFGFTVSPVNSWGPDGLPEYFVKDLGRNSVVQGLPNLGVTTAQAVAAFPIGKPELYYGASPSLYAVAPSKVREFNYP DGEENLYSHYSGDGGLPIGHPLQRLLAAAYLREPRLLFDGSLRHDSRLLLRRQVQERLDAIAPFLTFESQPYLVTARVPA VDGYRAEQHQYWLLDGFTSSRSYPYSAANPSGIRYFRNPVKVVVDALNGRVWIYVMDPGDPVLRTWRNAFPEMFRSLESM PLALRDHLLVPKTQFQVQAERLLRFHVTDVRSFYNGDDVWGIPKEIYGSKQVEVRPYHVTMQLPGKDTPEFVLLLPFTPL RRPNMVSWLAARNTVADYGQLRLWRFPQQRLLLGPQQISALIEQDPEISRQFGLWNREGSRVLQGNLLVIPLGKGLLYVE PIYLQARNGGIPTLVKVIVTDGRRFVMEDDLNSALRKLVAS >Mature_921_residues MKRLSRPAVLLAIAAAAMVLVVLPRLWIELQWFQQFELGPVVLKRWGLQFLALALVLGIGIPVQLNQLQRCWKLRRRDQA YRGESMFMPLRSWGLLVSLVIALGLLSTATSYLFVQALGLLQEPFSGIVLSSFPVLGSLPLPLVLGIAAVLLVFLLRWPL TTLRISLSLSILASATALARAWSFWLPAILASPFGEGDPVTGIDLSFTVLRLPAFQLVLSVLMAQGLVGLSACFWLCLSQ GNTLSDWRFAGFNRQQQAVLRPQLAVLALVAALMASLAPFELMVQSHGVVAGAGWVDLHLRLPLRLLLSLVLLTMLFSLL LPLPQRRRLLLPVSITALLLPIAEVIAAPLVQKLLVQPRELQMERPYLKRMIQGTRQAFDLNRMRVSTLNPRQQLTAADL EQSPGTIDNIRLWDTQPLLEANAQLQQLRLVYDFWSAAVDRYQLSDDLSQGRQQVMVAAREIDITALPATSRTWLNQHLV FTHGFGFTVSPVNSWGPDGLPEYFVKDLGRNSVVQGLPNLGVTTAQAVAAFPIGKPELYYGASPSLYAVAPSKVREFNYP DGEENLYSHYSGDGGLPIGHPLQRLLAAAYLREPRLLFDGSLRHDSRLLLRRQVQERLDAIAPFLTFESQPYLVTARVPA VDGYRAEQHQYWLLDGFTSSRSYPYSAANPSGIRYFRNPVKVVVDALNGRVWIYVMDPGDPVLRTWRNAFPEMFRSLESM PLALRDHLLVPKTQFQVQAERLLRFHVTDVRSFYNGDDVWGIPKEIYGSKQVEVRPYHVTMQLPGKDTPEFVLLLPFTPL RRPNMVSWLAARNTVADYGQLRLWRFPQQRLLLGPQQISALIEQDPEISRQFGLWNREGSRVLQGNLLVIPLGKGLLYVE PIYLQARNGGIPTLVKVIVTDGRRFVMEDDLNSALRKLVAS
Specific function: Unknown
COG id: COG1615
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0182 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005372 [H]
Pfam domain/function: PF03699 UPF0182 [H]
EC number: NA
Molecular weight: Translated: 103337; Mature: 103337
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLSRPAVLLAIAAAAMVLVVLPRLWIELQWFQQFELGPVVLKRWGLQFLALALVLGIG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC IPVQLNQLQRCWKLRRRDQAYRGESMFMPLRSWGLLVSLVIALGLLSTATSYLFVQALGL CCEEHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LQEPFSGIVLSSFPVLGSLPLPLVLGIAAVLLVFLLRWPLTTLRISLSLSILASATALAR HHCCCCCEEHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH AWSFWLPAILASPFGEGDPVTGIDLSFTVLRLPAFQLVLSVLMAQGLVGLSACFWLCLSQ HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GNTLSDWRFAGFNRQQQAVLRPQLAVLALVAALMASLAPFELMVQSHGVVAGAGWVDLHL CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEECCEEEEEE RLPLRLLLSLVLLTMLFSLLLPLPQRRRLLLPVSITALLLPIAEVIAAPLVQKLLVQPRE CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHH LQMERPYLKRMIQGTRQAFDLNRMRVSTLNPRQQLTAADLEQSPGTIDNIRLWDTQPLLE HHCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHH ANAQLQQLRLVYDFWSAAVDRYQLSDDLSQGRQQVMVAAREIDITALPATSRTWLNQHLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHCCEE FTHGFGFTVSPVNSWGPDGLPEYFVKDLGRNSVVQGLPNLGVTTAQAVAAFPIGKPELYY EEECCCCEECCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCEEE GASPSLYAVAPSKVREFNYPDGEENLYSHYSGDGGLPIGHPLQRLLAAAYLREPRLLFDG CCCCCEEEECHHHHHCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEECC SLRHDSRLLLRRQVQERLDAIAPFLTFESQPYLVTARVPAVDGYRAEQHQYWLLDGFTSS CCCCHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCCCCCEEEEECCCCC RSYPYSAANPSGIRYFRNPVKVVVDALNGRVWIYVMDPGDPVLRTWRNAFPEMFRSLESM CCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCC PLALRDHLLVPKTQFQVQAERLLRFHVTDVRSFYNGDDVWGIPKEIYGSKQVEVRPYHVT CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEEEEEE MQLPGKDTPEFVLLLPFTPLRRPNMVSWLAARNTVADYGQLRLWRFPQQRLLLGPQQISA EECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCHHHHHH LIEQDPEISRQFGLWNREGSRVLQGNLLVIPLGKGLLYVEPIYLQARNGGIPTLVKVIVT HHHCCHHHHHHCCCCCCCCCEEEECCEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHH DGRRFVMEDDLNSALRKLVAS CCCEEEEHHHHHHHHHHHHCC >Mature Secondary Structure MKRLSRPAVLLAIAAAAMVLVVLPRLWIELQWFQQFELGPVVLKRWGLQFLALALVLGIG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC IPVQLNQLQRCWKLRRRDQAYRGESMFMPLRSWGLLVSLVIALGLLSTATSYLFVQALGL CCEEHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LQEPFSGIVLSSFPVLGSLPLPLVLGIAAVLLVFLLRWPLTTLRISLSLSILASATALAR HHCCCCCEEHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH AWSFWLPAILASPFGEGDPVTGIDLSFTVLRLPAFQLVLSVLMAQGLVGLSACFWLCLSQ HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GNTLSDWRFAGFNRQQQAVLRPQLAVLALVAALMASLAPFELMVQSHGVVAGAGWVDLHL CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEECCEEEEEE RLPLRLLLSLVLLTMLFSLLLPLPQRRRLLLPVSITALLLPIAEVIAAPLVQKLLVQPRE CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHH LQMERPYLKRMIQGTRQAFDLNRMRVSTLNPRQQLTAADLEQSPGTIDNIRLWDTQPLLE HHCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHH ANAQLQQLRLVYDFWSAAVDRYQLSDDLSQGRQQVMVAAREIDITALPATSRTWLNQHLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHCCEE FTHGFGFTVSPVNSWGPDGLPEYFVKDLGRNSVVQGLPNLGVTTAQAVAAFPIGKPELYY EEECCCCEECCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCEEE GASPSLYAVAPSKVREFNYPDGEENLYSHYSGDGGLPIGHPLQRLLAAAYLREPRLLFDG CCCCCEEEECHHHHHCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEECC SLRHDSRLLLRRQVQERLDAIAPFLTFESQPYLVTARVPAVDGYRAEQHQYWLLDGFTSS CCCCHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCCCCCEEEEECCCCC RSYPYSAANPSGIRYFRNPVKVVVDALNGRVWIYVMDPGDPVLRTWRNAFPEMFRSLESM CCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCC PLALRDHLLVPKTQFQVQAERLLRFHVTDVRSFYNGDDVWGIPKEIYGSKQVEVRPYHVT CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEEEEEE MQLPGKDTPEFVLLLPFTPLRRPNMVSWLAARNTVADYGQLRLWRFPQQRLLLGPQQISA EECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCHHHHHH LIEQDPEISRQFGLWNREGSRVLQGNLLVIPLGKGLLYVEPIYLQARNGGIPTLVKVIVT HHHCCHHHHHHCCCCCCCCCEEEECCEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHH DGRRFVMEDDLNSALRKLVAS CCCEEEEHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12917642 [H]