| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148242558
Identifier: 148242558
GI number: 148242558
Start: 1297045
End: 1297584
Strand: Direct
Name: 148242558
Synonym: SynRCC307_1459
Alternate gene names: NA
Gene position: 1297045-1297584 (Clockwise)
Preceding gene: 148242552
Following gene: 148242559
Centisome position: 58.3
GC content: 62.96
Gene sequence:
>540_bases ATGTCCTGCCCCTCGGCCTGCAGCTGTTTAGCCCGGGCCGCAATGGCAAGCGTCAGAGATGGCTGCAACGAAGCCGCGCG GGCCGAAAGCTTCATGGGCATGGGCACACCCTCGTGGTGCCGCTCGGATCTTCGAATCCTCCAGTGTGCCTCAGCACTCG GGCATGCTGTGCGGGGCAACACCGCGGCAATGGGTGCACCGTTCTGGGTTCTGGCCAGTGAGGCCCCAGCGGCCTTGGCA CGCTTTTACAGCCAGCTGCTGAACGTGCCCGTTGAGATCAAGGGTTCGGTGCAGCAACTCACGCTGAGCCAGGGCCAGCA GTTGGTCATCTACCAACCCTCAACGCAAAGGCCCCAACCAGCGCAACACGGCCGTCTAGCGCTCTGCCTGCCCAGCGCCA ATCTCCAGAGCAGCCTTGAGCAAGCCCTGGCCCAAGGGGCCAGGGCCCTGGAATCGATTCGCCAGGAGTCCTTTGGACGT GAAGTCTGGATCGAAGATCCCGAAGGCAATCGCCTTTTGCTTCTGGAGTGGGCCCGATGA
Upstream 100 bases:
>100_bases TGGGCCGTAGCGGGTCATGCCCTGCTCGAGGGCCGCCGCTGCCGCCTGGCGAATGAAGGCCGGCGTGTCGAAGTTGGGTT CTCCAGCACTGAGGCTGCAA
Downstream 100 bases:
>100_bases GCAGCTCCTGGCCCCACCTCAGCGCCGCTTGCCACGGCTGTGAACGCTGCGAGCTGGCCACAACTCGGCACAACGTGGTC GTGGGGCGAGGCAATCCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MSCPSACSCLARAAMASVRDGCNEAARAESFMGMGTPSWCRSDLRILQCASALGHAVRGNTAAMGAPFWVLASEAPAALA RFYSQLLNVPVEIKGSVQQLTLSQGQQLVIYQPSTQRPQPAQHGRLALCLPSANLQSSLEQALAQGARALESIRQESFGR EVWIEDPEGNRLLLLEWAR
Sequences:
>Translated_179_residues MSCPSACSCLARAAMASVRDGCNEAARAESFMGMGTPSWCRSDLRILQCASALGHAVRGNTAAMGAPFWVLASEAPAALA RFYSQLLNVPVEIKGSVQQLTLSQGQQLVIYQPSTQRPQPAQHGRLALCLPSANLQSSLEQALAQGARALESIRQESFGR EVWIEDPEGNRLLLLEWAR >Mature_178_residues SCPSACSCLARAAMASVRDGCNEAARAESFMGMGTPSWCRSDLRILQCASALGHAVRGNTAAMGAPFWVLASEAPAALAR FYSQLLNVPVEIKGSVQQLTLSQGQQLVIYQPSTQRPQPAQHGRLALCLPSANLQSSLEQALAQGARALESIRQESFGRE VWIEDPEGNRLLLLEWAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19298; Mature: 19167
Theoretical pI: Translated: 7.72; Mature: 7.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSCPSACSCLARAAMASVRDGCNEAARAESFMGMGTPSWCRSDLRILQCASALGHAVRGN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC TAAMGAPFWVLASEAPAALARFYSQLLNVPVEIKGSVQQLTLSQGQQLVIYQPSTQRPQP CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCCCEEEEECCCCCCCCC AQHGRLALCLPSANLQSSLEQALAQGARALESIRQESFGREVWIEDPEGNRLLLLEWAR CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEECC >Mature Secondary Structure SCPSACSCLARAAMASVRDGCNEAARAESFMGMGTPSWCRSDLRILQCASALGHAVRGN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC TAAMGAPFWVLASEAPAALARFYSQLLNVPVEIKGSVQQLTLSQGQQLVIYQPSTQRPQP CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCCCEEEEECCCCCCCCC AQHGRLALCLPSANLQSSLEQALAQGARALESIRQESFGREVWIEDPEGNRLLLLEWAR CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA