| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148242523
Identifier: 148242523
GI number: 148242523
Start: 1262878
End: 1263684
Strand: Direct
Name: 148242523
Synonym: SynRCC307_1424
Alternate gene names: NA
Gene position: 1262878-1263684 (Clockwise)
Preceding gene: 148242521
Following gene: 148242529
Centisome position: 56.76
GC content: 57.99
Gene sequence:
>807_bases ATGCCGTTGGTTATGCCCCGCTGGTTGCTGTCTGCCATCTGCGCATTGCTGTTGTGCCTCTGGCAGCCATCGGCAGCCCT CGCCATCGACGACCCTTCGGTCTTACCGGATCAACCCACCCCTGTGATTGATCTGGCCAGGATCCTCACCGACAGCCAGC GCAAAAACCTGGAGCAAGAACTCGATGGCGTTGAAGCCAAGGTGGGCTGGAAATTGCGCGTACTCACCCAGTTCGATCAA ACACCAGGACTGGCCGTGCGCGATTTCTGGCAGCTGGATGAGCGCAGCCTGCTGTTGATTGCCGACCCCCGCGGCGGCAA CCTGTTGAACTTCAACGTGGGCGACGCTCTCTTTGCGCTGATGCCGCGCACCTACTGGGTGGAACTACAAACCCGCTTTG GCAATCAGTTTTATGTGCGCGACCACGGCGAAGACGGCGCCATTTTTGATGCCCTCGAAGCCGTTGAAATTTGCTTGGAG CGTGGTGGGTGCCAAGTGGTGCCTGGTTTGCCCCAAGAGCAGTGGATTCTCACCTTGATGACATCCATCTTGGGGGGATT GATCGTGGGAATTGCTGCATTCCCACGGGAACCGGATCAAACCATCGCCTGGTCTTGGGTGCTGCTGCTTTCACCGCTTT GGGTGATTCTCTTTGGCGTCTTTGGCATCGGCCCGGTGGTGACCCGCACGGCTGATTGGTTGCCACTGAGCCGCAATATT CTCGGCTTCATTGGGAGCAGCGTTGCCGCTTATCTCTTGGCTCAATATCTCACCAGCCGCAACAGCCAAGCAGGCGACAA CCCCTAG
Upstream 100 bases:
>100_bases GCGGCCCAGCGCTGGCCTGAAGGCGCTGCACCAGCCAGGAGCTCTGCTGCTGTTCCACCACAACACCTCCGCTGGACATC AACGAGAATGCACCACCTCA
Downstream 100 bases:
>100_bases ATCAAAGGCCCTCGCTCACCTTGGCGAGCATGCACTCGAGACTGTCGTCGTTGCAGGGCTCAGGGGCCACCTCAACCTGT TGGGGCTCTTCCATCAGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MPLVMPRWLLSAICALLLCLWQPSAALAIDDPSVLPDQPTPVIDLARILTDSQRKNLEQELDGVEAKVGWKLRVLTQFDQ TPGLAVRDFWQLDERSLLLIADPRGGNLLNFNVGDALFALMPRTYWVELQTRFGNQFYVRDHGEDGAIFDALEAVEICLE RGGCQVVPGLPQEQWILTLMTSILGGLIVGIAAFPREPDQTIAWSWVLLLSPLWVILFGVFGIGPVVTRTADWLPLSRNI LGFIGSSVAAYLLAQYLTSRNSQAGDNP
Sequences:
>Translated_268_residues MPLVMPRWLLSAICALLLCLWQPSAALAIDDPSVLPDQPTPVIDLARILTDSQRKNLEQELDGVEAKVGWKLRVLTQFDQ TPGLAVRDFWQLDERSLLLIADPRGGNLLNFNVGDALFALMPRTYWVELQTRFGNQFYVRDHGEDGAIFDALEAVEICLE RGGCQVVPGLPQEQWILTLMTSILGGLIVGIAAFPREPDQTIAWSWVLLLSPLWVILFGVFGIGPVVTRTADWLPLSRNI LGFIGSSVAAYLLAQYLTSRNSQAGDNP >Mature_267_residues PLVMPRWLLSAICALLLCLWQPSAALAIDDPSVLPDQPTPVIDLARILTDSQRKNLEQELDGVEAKVGWKLRVLTQFDQT PGLAVRDFWQLDERSLLLIADPRGGNLLNFNVGDALFALMPRTYWVELQTRFGNQFYVRDHGEDGAIFDALEAVEICLER GGCQVVPGLPQEQWILTLMTSILGGLIVGIAAFPREPDQTIAWSWVLLLSPLWVILFGVFGIGPVVTRTADWLPLSRNIL GFIGSSVAAYLLAQYLTSRNSQAGDNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29680; Mature: 29549
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLVMPRWLLSAICALLLCLWQPSAALAIDDPSVLPDQPTPVIDLARILTDSQRKNLEQE CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCHHHHHHHHH LDGVEAKVGWKLRVLTQFDQTPGLAVRDFWQLDERSLLLIADPRGGNLLNFNVGDALFAL HCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCEEEEECCCCCCEEEECHHHHHHHH MPRTYWVELQTRFGNQFYVRDHGEDGAIFDALEAVEICLERGGCQVVPGLPQEQWILTLM CCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHH TSILGGLIVGIAAFPREPDQTIAWSWVLLLSPLWVILFGVFGIGPVVTRTADWLPLSRNI HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHH LGFIGSSVAAYLLAQYLTSRNSQAGDNP HHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure PLVMPRWLLSAICALLLCLWQPSAALAIDDPSVLPDQPTPVIDLARILTDSQRKNLEQE CCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCHHHHHHHHH LDGVEAKVGWKLRVLTQFDQTPGLAVRDFWQLDERSLLLIADPRGGNLLNFNVGDALFAL HCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCEEEEECCCCCCEEEECHHHHHHHH MPRTYWVELQTRFGNQFYVRDHGEDGAIFDALEAVEICLERGGCQVVPGLPQEQWILTLM CCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHH TSILGGLIVGIAAFPREPDQTIAWSWVLLLSPLWVILFGVFGIGPVVTRTADWLPLSRNI HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHH LGFIGSSVAAYLLAQYLTSRNSQAGDNP HHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA