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The map label for this gene is mpeF [H]

Identifier: 148242492

GI number: 148242492

Start: 1241193

End: 1242125

Strand: Direct

Name: mpeF [H]

Synonym: SynRCC307_1393

Alternate gene names: 148242492

Gene position: 1241193-1242125 (Clockwise)

Preceding gene: 148242491

Following gene: 148242493

Centisome position: 55.79

GC content: 56.16

Gene sequence:

>933_bases
ATGGACAACTCCCTGTCACCCAAGATGGACTTTGGTGGGATCACCAAAACAGAGGGCGTTACTTACAACAACTCCAATGG
GGCTAGCAGTGTTGCCGCCCTCACCACTGCCGATTTCCTGAGGGATTCCTGCGCTCAAATGAAGCTGGGTGTTGGCGCCC
GTGATCACCAGGCATGCCCGCACAGGGTGACTTTTGACTATTACTCACCCTCCGATAGCGCAACGTTGCAGGAGGCCATA
CATGCCGCCTACCGGCATCTTCATGGCAACTGCTATGTCATGGACAACGAGCGCGCCGCTGAGCTGGAATCCCAGCTCAG
CCATGGCTCACTGAGCATTCGCGAATTCGTGCGGGCCTTGGTGAAGCGTGACTTCTACAAAGATCGTTTTTTCTCGGTGG
TGTCACCACATCGGGGAATTGAACTGACCTTCAAACACCTGTTGGGCCGCCCGCCGCTGCATCAGCAAGAAATCTCCGCT
GCGATTGCAACACAAGCCGCCCATGGCTTCGACGCCTTGGTTGACAGCCTGATGGATTCCGCCGAATACAGCGAAGTCTT
CGGTGCAGACACCGTTCCCTATTCCAGGGCCTGGACCTCAGCGAGCGGTATGCCAATGATCAACTTTGTTCGCATGGCAG
CGCTGGAGCAAAACTTTGTGACCAGCGATCGCAACAACGGATCGGCCTCAATCCTGCTTGGCAACCTCACCAAAGGCACT
CCTTTGCCTATCAAGGTGAGCAAGAAGGTCAATTTCGTTGGCGTGTCGGCCGCTTGGGGTGCTGGCAAGCCCCCAGCCAA
TTACGAAAAGCTCTGGCGTGGTCTGGCCCTGGTCGGTGGCGCTCACCTGGCCGGAATGCTCGTCAATGTGCTCTCACAAA
TGGCCGGAATTCATGCCCTTGATCGCATTCCAGCGATGTTCCTGGGTCTTTGA

Upstream 100 bases:

>100_bases
TGAGCTGGCTTGAAGGCTTGATAAAAGCCCTTCTAGTGCCACCCAAGCCAGGCTTTATTGCTGTGGACGTGGCCTCAGCT
GAACCAACAATCGACGCCCC

Downstream 100 bases:

>100_bases
TTGCTGTTGACCCATCAGGGGCTGCCACCACAGCCCCTCTTCCTTTAAAAGAGATGCTGGATAGATTCGGGTAAATCCCA
CGCACGATGGATCTCAGCTT

Product: phycobilisome linker polypeptide, C-phycoerythrin class II-associated

Products: NA

Alternate protein names: L-R 32.1; Phycobilisome 32.1 kDa rod linker polypeptide; Phycoerythrin class II gamma chain, linker polypeptide [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDNSLSPKMDFGGITKTEGVTYNNSNGASSVAALTTADFLRDSCAQMKLGVGARDHQACPHRVTFDYYSPSDSATLQEAI
HAAYRHLHGNCYVMDNERAAELESQLSHGSLSIREFVRALVKRDFYKDRFFSVVSPHRGIELTFKHLLGRPPLHQQEISA
AIATQAAHGFDALVDSLMDSAEYSEVFGADTVPYSRAWTSASGMPMINFVRMAALEQNFVTSDRNNGSASILLGNLTKGT
PLPIKVSKKVNFVGVSAAWGAGKPPANYEKLWRGLALVGGAHLAGMLVNVLSQMAGIHALDRIPAMFLGL

Sequences:

>Translated_310_residues
MDNSLSPKMDFGGITKTEGVTYNNSNGASSVAALTTADFLRDSCAQMKLGVGARDHQACPHRVTFDYYSPSDSATLQEAI
HAAYRHLHGNCYVMDNERAAELESQLSHGSLSIREFVRALVKRDFYKDRFFSVVSPHRGIELTFKHLLGRPPLHQQEISA
AIATQAAHGFDALVDSLMDSAEYSEVFGADTVPYSRAWTSASGMPMINFVRMAALEQNFVTSDRNNGSASILLGNLTKGT
PLPIKVSKKVNFVGVSAAWGAGKPPANYEKLWRGLALVGGAHLAGMLVNVLSQMAGIHALDRIPAMFLGL
>Mature_310_residues
MDNSLSPKMDFGGITKTEGVTYNNSNGASSVAALTTADFLRDSCAQMKLGVGARDHQACPHRVTFDYYSPSDSATLQEAI
HAAYRHLHGNCYVMDNERAAELESQLSHGSLSIREFVRALVKRDFYKDRFFSVVSPHRGIELTFKHLLGRPPLHQQEISA
AIATQAAHGFDALVDSLMDSAEYSEVFGADTVPYSRAWTSASGMPMINFVRMAALEQNFVTSDRNNGSASILLGNLTKGT
PLPIKVSKKVNFVGVSAAWGAGKPPANYEKLWRGLALVGGAHLAGMLVNVLSQMAGIHALDRIPAMFLGL

Specific function: This protein is a bile pigment-bearing rod linker polypeptide that associates with C-phycoerythrin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Periphery of the rods of the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 33577; Mature: 33577

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNSLSPKMDFGGITKTEGVTYNNSNGASSVAALTTADFLRDSCAQMKLGVGARDHQACP
CCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
HRVTFDYYSPSDSATLQEAIHAAYRHLHGNCYVMDNERAAELESQLSHGSLSIREFVRAL
CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHH
VKRDFYKDRFFSVVSPHRGIELTFKHLLGRPPLHQQEISAAIATQAAHGFDALVDSLMDS
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AEYSEVFGADTVPYSRAWTSASGMPMINFVRMAALEQNFVTSDRNNGSASILLGNLTKGT
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
PLPIKVSKKVNFVGVSAAWGAGKPPANYEKLWRGLALVGGAHLAGMLVNVLSQMAGIHAL
CCCEEECCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DRIPAMFLGL
HHHHHHHHCC
>Mature Secondary Structure
MDNSLSPKMDFGGITKTEGVTYNNSNGASSVAALTTADFLRDSCAQMKLGVGARDHQACP
CCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
HRVTFDYYSPSDSATLQEAIHAAYRHLHGNCYVMDNERAAELESQLSHGSLSIREFVRAL
CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHH
VKRDFYKDRFFSVVSPHRGIELTFKHLLGRPPLHQQEISAAIATQAAHGFDALVDSLMDS
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AEYSEVFGADTVPYSRAWTSASGMPMINFVRMAALEQNFVTSDRNNGSASILLGNLTKGT
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
PLPIKVSKKVNFVGVSAAWGAGKPPANYEKLWRGLALVGGAHLAGMLVNVLSQMAGIHAL
CCCEEECCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DRIPAMFLGL
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8425055; 8419325 [H]