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The map label for this gene is nlpD [C]

Identifier: 148242335

GI number: 148242335

Start: 1095923

End: 1096834

Strand: Direct

Name: nlpD [C]

Synonym: SynRCC307_1236

Alternate gene names: 148242335

Gene position: 1095923-1096834 (Clockwise)

Preceding gene: 148242334

Following gene: 148242337

Centisome position: 49.26

GC content: 60.64

Gene sequence:

>912_bases
GTGAAGCCAAGCACCCTTTTCGTTCTGGGCACCTGCAGCTCACCCGTGGTGTTGGCCATGGCTGCTGGTTTTCCAAGTCG
AAGCGATGATCTGGTGATTCCCGAGCTGCCCCCCTTGGTGGCTGCAGCTCCGGCCTCTGTCTCCACCCTTTGGGTGAAGA
CCTTGGAGAAAGTCAGTGTGATGGATCTCGCTGAGCAAGTGGAGATGGAGCCGATTCGTTTGGCCCAGCTCAATGGTCTC
AGCGCCCTCGACCATTTTGAAGCTCAGCAGTGGGTCGCCCTGCCTGAGTCACTTGAGTCATCACTGTTTTTAGTGGCCTC
TCTCGACGCCAATTCGGCCCAAGACGCCAAACCCGATTCCTTCGCCGATGACAATCTGGCGGCCAAGATGAAGCGGCTTG
GAAAGCTGGTGAGCCAGTCGACCCTGCCCCCAGTCCACGCCCGCCGAACCCTCGCCATCGTCCCTGGCATGAGCGGCGGC
TTGAGTTGGCCTGAACTCCCTGATTTTGGGCAGCTGCGCCGGCCACAGCTCTCCGGTTTCATTTGGCCTGCGAAAGGCAC
GCTCACCTCTGGCTATGGCTGGCGCTGGGGCCGCATGCACCGCGGCATTGATGTCGCCAACAGCGTCGGCACCCCCATCA
TTGCGGCCGCCGATGGCAAGGTTGTGTTCTCCGGTTGGAGTTCAGGCGGCTACGGCTACCTGGTTGAGTTGGCCCACACC
GATGGCAGCAAAACCCGCTATGCCCACAACAGCGCCTTGCTGGTGAAGAAGGGCCAAAGCGTTCGCCAAGGAACCGCGAT
CGCACGGATGGGAAGCACCGGCAGAAGCACTGGTCCTCACCTGCATTTTGAAATCATCAAGCCCGGCCTTGGCGCCGTGA
ACCCTGTCAGTCACCTGAGTCGTCGGGGCTGA

Upstream 100 bases:

>100_bases
TCGGTGGATTTCATCCCACCTCACCCTTGATCATTTACCTACGAGCAGGTAATTTACGCCCGATCCCGCCTGAGGGGATT
GGTTCTCAGTCATTTTTTGC

Downstream 100 bases:

>100_bases
CGATCCCGTACACTCATTCGCTCAAGGCTCGGTAGCTCAGCTGGTTAGAGCACAGCATTCATAACGCTGGGGTCGGGAGT
TCAAGTCTCCCCCGAGCCAT

Product: Zinc metallopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MKPSTLFVLGTCSSPVVLAMAAGFPSRSDDLVIPELPPLVAAAPASVSTLWVKTLEKVSVMDLAEQVEMEPIRLAQLNGL
SALDHFEAQQWVALPESLESSLFLVASLDANSAQDAKPDSFADDNLAAKMKRLGKLVSQSTLPPVHARRTLAIVPGMSGG
LSWPELPDFGQLRRPQLSGFIWPAKGTLTSGYGWRWGRMHRGIDVANSVGTPIIAAADGKVVFSGWSSGGYGYLVELAHT
DGSKTRYAHNSALLVKKGQSVRQGTAIARMGSTGRSTGPHLHFEIIKPGLGAVNPVSHLSRRG

Sequences:

>Translated_303_residues
MKPSTLFVLGTCSSPVVLAMAAGFPSRSDDLVIPELPPLVAAAPASVSTLWVKTLEKVSVMDLAEQVEMEPIRLAQLNGL
SALDHFEAQQWVALPESLESSLFLVASLDANSAQDAKPDSFADDNLAAKMKRLGKLVSQSTLPPVHARRTLAIVPGMSGG
LSWPELPDFGQLRRPQLSGFIWPAKGTLTSGYGWRWGRMHRGIDVANSVGTPIIAAADGKVVFSGWSSGGYGYLVELAHT
DGSKTRYAHNSALLVKKGQSVRQGTAIARMGSTGRSTGPHLHFEIIKPGLGAVNPVSHLSRRG
>Mature_303_residues
MKPSTLFVLGTCSSPVVLAMAAGFPSRSDDLVIPELPPLVAAAPASVSTLWVKTLEKVSVMDLAEQVEMEPIRLAQLNGL
SALDHFEAQQWVALPESLESSLFLVASLDANSAQDAKPDSFADDNLAAKMKRLGKLVSQSTLPPVHARRTLAIVPGMSGG
LSWPELPDFGQLRRPQLSGFIWPAKGTLTSGYGWRWGRMHRGIDVANSVGTPIIAAADGKVVFSGWSSGGYGYLVELAHT
DGSKTRYAHNSALLVKKGQSVRQGTAIARMGSTGRSTGPHLHFEIIKPGLGAVNPVSHLSRRG

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=121, Percent_Identity=44.6280991735537, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87081989, Length=98, Percent_Identity=47.9591836734694, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87082174, Length=124, Percent_Identity=40.3225806451613, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87082297, Length=162, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 32238; Mature: 32238

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSTLFVLGTCSSPVVLAMAAGFPSRSDDLVIPELPPLVAAAPASVSTLWVKTLEKVSV
CCCCEEEEEECCCCCEEEEEECCCCCCCCCEECCCCCCHHHCCCCCHHHHHHHHHHHHHH
MDLAEQVEMEPIRLAQLNGLSALDHFEAQQWVALPESLESSLFLVASLDANSAQDAKPDS
HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCCCCCCCCC
FADDNLAAKMKRLGKLVSQSTLPPVHARRTLAIVPGMSGGLSWPELPDFGQLRRPQLSGF
CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE
IWPAKGTLTSGYGWRWGRMHRGIDVANSVGTPIIAAADGKVVFSGWSSGGYGYLVELAHT
EECCCCCCCCCCCCCHHHHHCCCCHHHHCCCCEEEECCCEEEEECCCCCCCEEEEEEEEC
DGSKTRYAHNSALLVKKGQSVRQGTAIARMGSTGRSTGPHLHFEIIKPGLGAVNPVSHLS
CCCCCEEECCCEEEEECCCCHHHCHHHEECCCCCCCCCCEEEEEEECCCCCCCCHHHHHH
RRG
CCC
>Mature Secondary Structure
MKPSTLFVLGTCSSPVVLAMAAGFPSRSDDLVIPELPPLVAAAPASVSTLWVKTLEKVSV
CCCCEEEEEECCCCCEEEEEECCCCCCCCCEECCCCCCHHHCCCCCHHHHHHHHHHHHHH
MDLAEQVEMEPIRLAQLNGLSALDHFEAQQWVALPESLESSLFLVASLDANSAQDAKPDS
HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCCCCCCCCC
FADDNLAAKMKRLGKLVSQSTLPPVHARRTLAIVPGMSGGLSWPELPDFGQLRRPQLSGF
CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE
IWPAKGTLTSGYGWRWGRMHRGIDVANSVGTPIIAAADGKVVFSGWSSGGYGYLVELAHT
EECCCCCCCCCCCCCHHHHHCCCCHHHHCCCCEEEECCCEEEEECCCCCCCEEEEEEEEC
DGSKTRYAHNSALLVKKGQSVRQGTAIARMGSTGRSTGPHLHFEIIKPGLGAVNPVSHLS
CCCCCEEECCCEEEEECCCCHHHCHHHEECCCCCCCCCCEEEEEEECCCCCCCCHHHHHH
RRG
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]