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The map label for this gene is csgD [C]

Identifier: 148242300

GI number: 148242300

Start: 1057957

End: 1058643

Strand: Direct

Name: csgD [C]

Synonym: SynRCC307_1201

Alternate gene names: 148242300

Gene position: 1057957-1058643 (Clockwise)

Preceding gene: 148242299

Following gene: 148242302

Centisome position: 47.55

GC content: 48.91

Gene sequence:

>687_bases
ATGGATTTCACCCCTTATCTGGACACCTTTCAGTCCTCCAGCTTGGGGGAAGCCCTGCTCTCAGTCTCGGTCGATGGAAA
GATTGCCTTGGCCATGAAGGGCCGCTTCTTTCTGCGGTGTTTTTGTGAAAGCTTTGAACATCAAAACTTGATTGGTTGCG
CTGTAACTGATGCCAAAAGCTGCTTGCATTATCTAAAAGAGCAGGATTTTCAGCTTCTGATCTGCACCGATTTTTTGGAA
AATGGCAACGGCTTTGAGTTGGTCCACGAAGCTCGCAAACTGCAGCCCAGCCTTAAAACGGTTGTTTTAGCGCTCGGCGA
TGTGATTCCGGTTGAATTTAGTGACGCTGACTGGCTTCAGGCCGTTGTTGCTGAAGCTGATTTTGTTGATGATCAAAAAC
CACTTGAAGCGGCAATTATTGCTGTCATGGGAAATCACGGCTACCGCAGCGTTTCCCTGCGCTCAGGCCAATTGCCGTAT
CTCAGCTGTCCGCGGCTCACACCCCGTGAATATGAGGTGCTTGATTTGCTGGCCAGTGGCTTGAGTGATCGTGAAATCGC
TGAAAAGCTGATTGTGAGTGAAGAAACCTCCAGGACTTACACCAAACGGTTGTTGAGAACCCTCGAAGTCAACAACAGGG
TTCAGGCGGTTTTGAAAGGAATGCGATGTGGGATGGTCAAAATCTGA

Upstream 100 bases:

>100_bases
AATGACGCCTTAATTCTCAAAGAAGTGTAAACCTGGCCACAGTGGCCTTTGCGGGGCGAGATGATGGCAGAGCAGATGGG
TTGATAAATCAAGCAAGGCT

Downstream 100 bases:

>100_bases
GCACCTCGTCACCCCATGGTCACGAACTCTTCTGAAATGCTGGGGTGAAGGGCCATGGTGCGATCGAAATCGGCCTTGGT
GGCCCCCATGCCCAAGGCGA

Product: two-component system response regulator

Products: NA

Alternate protein names: Two-Component System Response Regulator; Response Regulator; Two Component Transcriptional Regulator Luxr Family

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MDFTPYLDTFQSSSLGEALLSVSVDGKIALAMKGRFFLRCFCESFEHQNLIGCAVTDAKSCLHYLKEQDFQLLICTDFLE
NGNGFELVHEARKLQPSLKTVVLALGDVIPVEFSDADWLQAVVAEADFVDDQKPLEAAIIAVMGNHGYRSVSLRSGQLPY
LSCPRLTPREYEVLDLLASGLSDREIAEKLIVSEETSRTYTKRLLRTLEVNNRVQAVLKGMRCGMVKI

Sequences:

>Translated_228_residues
MDFTPYLDTFQSSSLGEALLSVSVDGKIALAMKGRFFLRCFCESFEHQNLIGCAVTDAKSCLHYLKEQDFQLLICTDFLE
NGNGFELVHEARKLQPSLKTVVLALGDVIPVEFSDADWLQAVVAEADFVDDQKPLEAAIIAVMGNHGYRSVSLRSGQLPY
LSCPRLTPREYEVLDLLASGLSDREIAEKLIVSEETSRTYTKRLLRTLEVNNRVQAVLKGMRCGMVKI
>Mature_228_residues
MDFTPYLDTFQSSSLGEALLSVSVDGKIALAMKGRFFLRCFCESFEHQNLIGCAVTDAKSCLHYLKEQDFQLLICTDFLE
NGNGFELVHEARKLQPSLKTVVLALGDVIPVEFSDADWLQAVVAEADFVDDQKPLEAAIIAVMGNHGYRSVSLRSGQLPY
LSCPRLTPREYEVLDLLASGLSDREIAEKLIVSEETSRTYTKRLLRTLEVNNRVQAVLKGMRCGMVKI

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25458; Mature: 25458

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFTPYLDTFQSSSLGEALLSVSVDGKIALAMKGRFFLRCFCESFEHQNLIGCAVTDAKS
CCCCCCHHHHCCCCHHHHHHEECCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEHHHHHH
CLHYLKEQDFQLLICTDFLENGNGFELVHEARKLQPSLKTVVLALGDVIPVEFSDADWLQ
HHHHHHCCCCEEEEEEHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCEEEECCHHHHH
AVVAEADFVDDQKPLEAAIIAVMGNHGYRSVSLRSGQLPYLSCPRLTPREYEVLDLLASG
HHHHHHHCCCCCCHHHHHHHHEECCCCCEEEEECCCCCCEEECCCCCCCHHHHHHHHHCC
LSDREIAEKLIVSEETSRTYTKRLLRTLEVNNRVQAVLKGMRCGMVKI
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDFTPYLDTFQSSSLGEALLSVSVDGKIALAMKGRFFLRCFCESFEHQNLIGCAVTDAKS
CCCCCCHHHHCCCCHHHHHHEECCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEHHHHHH
CLHYLKEQDFQLLICTDFLENGNGFELVHEARKLQPSLKTVVLALGDVIPVEFSDADWLQ
HHHHHHCCCCEEEEEEHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCEEEECCHHHHH
AVVAEADFVDDQKPLEAAIIAVMGNHGYRSVSLRSGQLPYLSCPRLTPREYEVLDLLASG
HHHHHHHCCCCCCHHHHHHHHEECCCCCEEEEECCCCCCEEECCCCCCCHHHHHHHHHCC
LSDREIAEKLIVSEETSRTYTKRLLRTLEVNNRVQAVLKGMRCGMVKI
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA