| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
Click here to switch to the map view.
The map label for this gene is 148242160
Identifier: 148242160
GI number: 148242160
Start: 957618
End: 958415
Strand: Direct
Name: 148242160
Synonym: SynRCC307_1061
Alternate gene names: NA
Gene position: 957618-958415 (Clockwise)
Preceding gene: 148242159
Following gene: 148242161
Centisome position: 43.04
GC content: 57.89
Gene sequence:
>798_bases GTGTTGCCTCCAGCTGCTTGGAAAGCCATGGGATTTCGCTATCTCGATCAGATCGCCAGCCGTCAGCACATTCAGCAGTT TCTTGAGCTCGCTGATTTGGCTGCCGGTGGCGGCGATTCAGCTGAAAACGTTTTTCGGCTGTCGCACCGCCTGCGCGACT CCAAGCCGATGCGCTTGTGTGAGCGCGTCTTGCAGCGTGACCCGGCGTCTGCTGCCTTGATTGCTGAGCGCCGTTTGGTG GGCCCCTATGACCTCGATGCCCTCAAGGCCTGCCCCAAAGGCAGCTTGGGCCACACCTATGCGGTGGTGATGGAAACCAT CGGCTACGACATCAACTTTTTCCCCGATCCGGCCTATTTCGCCAACCTGGAAACCGACGCCGACTACATCAACTACCGGG TGTACGCGACCCACGACATCCACCACATCCTCAGCGGCTTCAGCCTCGACAATTTTGGCGAAACCGGAGTGATCAGCATC AGCGTTGGCCAGTTCAACCACCCGGGCTTGGGGTTTGTTGATTTGATTGATCTGCTGCTTCAGTTCCTGCTTAATGAAAC GCCTTTCGATGAGGCCACCAGTGCCAAGCAGCAGGCCCATACAGCTGGTTATGTGTTCCACATGATTGGCCATGGACTGG AGATGGCGGCCCAGGCCAAGCCGCTGTTCCCGGTGCTATGGGAGGAGCGCTTTGAGCAGGATCTCGAGGACCTGCGCAAC GAGCTCGGGATTCAGGCGGTGCGTGAAGGGGCGTTTAGCTGGTATTCCAACCAAGAGATTGCAGCCGCTCTAGGCTGA
Upstream 100 bases:
>100_bases GAGTGGTTCCAGCTGGTCATCCCGCTGATCTTGAAATGCTTCGGGGGGTTTTATTCCGCCCCCTGACGACTCTGGATACT GTCGCGCTGAGGGCTCCGTT
Downstream 100 bases:
>100_bases TCCCAGTAACTGCTTAGACCGTTCTCAGCTCATTTGGATTGACTTCGATCAACCCAAAAACCTTGGATCAAACCAAGAGA GGAGGGAGAGAGATGAATCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MLPPAAWKAMGFRYLDQIASRQHIQQFLELADLAAGGGDSAENVFRLSHRLRDSKPMRLCERVLQRDPASAALIAERRLV GPYDLDALKACPKGSLGHTYAVVMETIGYDINFFPDPAYFANLETDADYINYRVYATHDIHHILSGFSLDNFGETGVISI SVGQFNHPGLGFVDLIDLLLQFLLNETPFDEATSAKQQAHTAGYVFHMIGHGLEMAAQAKPLFPVLWEERFEQDLEDLRN ELGIQAVREGAFSWYSNQEIAAALG
Sequences:
>Translated_265_residues MLPPAAWKAMGFRYLDQIASRQHIQQFLELADLAAGGGDSAENVFRLSHRLRDSKPMRLCERVLQRDPASAALIAERRLV GPYDLDALKACPKGSLGHTYAVVMETIGYDINFFPDPAYFANLETDADYINYRVYATHDIHHILSGFSLDNFGETGVISI SVGQFNHPGLGFVDLIDLLLQFLLNETPFDEATSAKQQAHTAGYVFHMIGHGLEMAAQAKPLFPVLWEERFEQDLEDLRN ELGIQAVREGAFSWYSNQEIAAALG >Mature_265_residues MLPPAAWKAMGFRYLDQIASRQHIQQFLELADLAAGGGDSAENVFRLSHRLRDSKPMRLCERVLQRDPASAALIAERRLV GPYDLDALKACPKGSLGHTYAVVMETIGYDINFFPDPAYFANLETDADYINYRVYATHDIHHILSGFSLDNFGETGVISI SVGQFNHPGLGFVDLIDLLLQFLLNETPFDEATSAKQQAHTAGYVFHMIGHGLEMAAQAKPLFPVLWEERFEQDLEDLRN ELGIQAVREGAFSWYSNQEIAAALG
Specific function: Unknown
COG id: COG5031
COG function: function code H; Uncharacterized protein involved in ubiquinone biosynthesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29576; Mature: 29576
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPPAAWKAMGFRYLDQIASRQHIQQFLELADLAAGGGDSAENVFRLSHRLRDSKPMRLC CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHH ERVLQRDPASAALIAERRLVGPYDLDALKACPKGSLGHTYAVVMETIGYDINFFPDPAYF HHHHHCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHE ANLETDADYINYRVYATHDIHHILSGFSLDNFGETGVISISVGQFNHPGLGFVDLIDLLL ECCCCCCCEEEEEEEEEHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHH QFLLNETPFDEATSAKQQAHTAGYVFHMIGHGLEMAAQAKPLFPVLWEERFEQDLEDLRN HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH ELGIQAVREGAFSWYSNQEIAAALG HHHHHHHHHHHHHHCCCCCHHHHCC >Mature Secondary Structure MLPPAAWKAMGFRYLDQIASRQHIQQFLELADLAAGGGDSAENVFRLSHRLRDSKPMRLC CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHH ERVLQRDPASAALIAERRLVGPYDLDALKACPKGSLGHTYAVVMETIGYDINFFPDPAYF HHHHHCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHE ANLETDADYINYRVYATHDIHHILSGFSLDNFGETGVISISVGQFNHPGLGFVDLIDLLL ECCCCCCCEEEEEEEEEHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHH QFLLNETPFDEATSAKQQAHTAGYVFHMIGHGLEMAAQAKPLFPVLWEERFEQDLEDLRN HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH ELGIQAVREGAFSWYSNQEIAAALG HHHHHHHHHHHHHHCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA