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The map label for this gene is dapB

Identifier: 148242070

GI number: 148242070

Start: 890940

End: 891761

Strand: Direct

Name: dapB

Synonym: SynRCC307_0971

Alternate gene names: 148242070

Gene position: 890940-891761 (Clockwise)

Preceding gene: 148242065

Following gene: 148242071

Centisome position: 40.04

GC content: 62.9

Gene sequence:

>822_bases
ATGACAGATCAGATCCCAGTCGTGGTGGCCGGAGCCCTGGGCCGGATGGGCGCGGAAGTGATCAAAGCGGTCCACACGGC
AGGGGACTGTCAGCTGGTAGGGGCGATTGATACCTGCCCGGGTCGCGAAGGCGAAGACGTTGGCTTGGCCTTGGGTTTGG
GTGAGCTTGAAGTGGCTCTGACCCAGGATTTTGAGGGCGCTCTCTGCTTGGCCAGTCAGCAGCACCCCGGAGCAGTGTTG
GTGGATTTCACCCACCCGAAGGTGGTTTATGAGCACACCCGCGCCGCCATTGCCTATGGGGTCACGCCCGTGATCGGCAC
CACTGGCCTCGCGCCAGAGCAACTGCAAGAGCTAGCCAGCTTTGCCGCTAAGGCCTCGATGGGGGGTGCTGTGATCCCCA
ATTTTTCGGTGGGCATGGTGCTGCTGCAGCAAGCCGCTGCCGCCGCCGCCCGCTTCTATGACCATGCCGAGCTGGTTGAG
CTGCACCACAACCGCAAAGCCGATGCCCCCAGCGGCACCTGCATCAAAACCGCCGAGCTGATGGAGGAGCTGGGCAAACA
GTTCAATGCCCAAGAGGTGGAGGAGCACGAAACCCTCGAGGGCAGCCGTGGCGGCCTGCGTCCCAGTGGCCTCCGGCTCC
ATTCGATTCGCCTACCCGGTTTGGTGGCCCATCAAGAAGTTCAATTTGGCGGAGCCGGCGAGCGCTACGTGCTGCGTCAT
GACACCTTTGATCGCGCGGCCTACATGCCTGGGGTGCTGCTGACCGTGCGCAAGGTGCGTCAGCTCGGCGCTCTGGTTTA
TGGCTTGGAGCGGCTGCTGTAA

Upstream 100 bases:

>100_bases
GCGACGGCTAGAAGAACGGACCTGGGTGAACATGCGCGAAGGCGGGCGATCAGGAAAGATTACGAACAGACTCGTCCCAT
TGGGGCCAACCTCGCGCTTT

Downstream 100 bases:

>100_bases
GCCATGTTGCTTCCGCTCAAACCCGGCGAACTGCAGCGGCTGATCCCTGCTGTGGCCAGTGGCCCTCAATTCAATAAGTG
CTCCGGCAGCCCCCAACAGC

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MTDQIPVVVAGALGRMGAEVIKAVHTAGDCQLVGAIDTCPGREGEDVGLALGLGELEVALTQDFEGALCLASQQHPGAVL
VDFTHPKVVYEHTRAAIAYGVTPVIGTTGLAPEQLQELASFAAKASMGGAVIPNFSVGMVLLQQAAAAAARFYDHAELVE
LHHNRKADAPSGTCIKTAELMEELGKQFNAQEVEEHETLEGSRGGLRPSGLRLHSIRLPGLVAHQEVQFGGAGERYVLRH
DTFDRAAYMPGVLLTVRKVRQLGALVYGLERLL

Sequences:

>Translated_273_residues
MTDQIPVVVAGALGRMGAEVIKAVHTAGDCQLVGAIDTCPGREGEDVGLALGLGELEVALTQDFEGALCLASQQHPGAVL
VDFTHPKVVYEHTRAAIAYGVTPVIGTTGLAPEQLQELASFAAKASMGGAVIPNFSVGMVLLQQAAAAAARFYDHAELVE
LHHNRKADAPSGTCIKTAELMEELGKQFNAQEVEEHETLEGSRGGLRPSGLRLHSIRLPGLVAHQEVQFGGAGERYVLRH
DTFDRAAYMPGVLLTVRKVRQLGALVYGLERLL
>Mature_272_residues
TDQIPVVVAGALGRMGAEVIKAVHTAGDCQLVGAIDTCPGREGEDVGLALGLGELEVALTQDFEGALCLASQQHPGAVLV
DFTHPKVVYEHTRAAIAYGVTPVIGTTGLAPEQLQELASFAAKASMGGAVIPNFSVGMVLLQQAAAAAARFYDHAELVEL
HHNRKADAPSGTCIKTAELMEELGKQFNAQEVEEHETLEGSRGGLRPSGLRLHSIRLPGLVAHQEVQFGGAGERYVLRHD
TFDRAAYMPGVLLTVRKVRQLGALVYGLERLL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family

Homologues:

Organism=Escherichia coli, GI1786214, Length=254, Percent_Identity=30.3149606299213, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DAPB_SYNR3 (A5GSL5)

Other databases:

- EMBL:   CT978603
- RefSeq:   YP_001227227.1
- ProteinModelPortal:   A5GSL5
- SMR:   A5GSL5
- STRING:   A5GSL5
- GeneID:   5158468
- GenomeReviews:   CT978603_GR
- KEGG:   syr:SynRCC307_0971
- eggNOG:   COG0289
- HOGENOM:   HBG594002
- OMA:   ARFYDHA
- ProtClustDB:   PRK00048
- GO:   GO:0005737
- GO:   GO:0005488
- HAMAP:   MF_00102
- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040
- Gene3D:   G3DSA:3.40.50.720
- PANTHER:   PTHR20836
- TIGRFAMs:   TIGR00036

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N

EC number: =1.3.1.26

Molecular weight: Translated: 28976; Mature: 28844

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQIPVVVAGALGRMGAEVIKAVHTAGDCQLVGAIDTCPGREGEDVGLALGLGELEVAL
CCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEE
TQDFEGALCLASQQHPGAVLVDFTHPKVVYEHTRAAIAYGVTPVIGTTGLAPEQLQELAS
ECCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHH
FAAKASMGGAVIPNFSVGMVLLQQAAAAAARFYDHAELVELHHNRKADAPSGTCIKTAEL
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHH
MEELGKQFNAQEVEEHETLEGSRGGLRPSGLRLHSIRLPGLVAHQEVQFGGAGERYVLRH
HHHHHHHCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEECCEEEECCCCCEEEEEC
DTFDRAAYMPGVLLTVRKVRQLGALVYGLERLL
CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
TDQIPVVVAGALGRMGAEVIKAVHTAGDCQLVGAIDTCPGREGEDVGLALGLGELEVAL
CCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEE
TQDFEGALCLASQQHPGAVLVDFTHPKVVYEHTRAAIAYGVTPVIGTTGLAPEQLQELAS
ECCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHH
FAAKASMGGAVIPNFSVGMVLLQQAAAAAARFYDHAELVELHHNRKADAPSGTCIKTAEL
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHH
MEELGKQFNAQEVEEHETLEGSRGGLRPSGLRLHSIRLPGLVAHQEVQFGGAGERYVLRH
HHHHHHHCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEECCEEEECCCCCEEEEEC
DTFDRAAYMPGVLLTVRKVRQLGALVYGLERLL
CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA