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The map label for this gene is tdcF [C]

Identifier: 148241939

GI number: 148241939

Start: 764819

End: 765217

Strand: Direct

Name: tdcF [C]

Synonym: SynRCC307_0840

Alternate gene names: 148241939

Gene position: 764819-765217 (Clockwise)

Preceding gene: 148241938

Following gene: 148241943

Centisome position: 34.38

GC content: 60.4

Gene sequence:

>399_bases
ATGAGCGCTGCTCCCCTCGAAGCTGTTGAAACGCAGGCCGCTCCAGCCCCGGTGGGGCCCTACAACCAGGCGGTTAAAGC
CGGCGGCATGCTGTTTTGCTCAGGCCAGATTCCCTTGGATCCAGCCAGCGGAACGATGGTGGGTGGCGGCGATGTGGAAG
CAGAAACCCGTCAGGTGTTGAGCAATCTCAAAGCGGTGCTGACGGCCGCCGGATGCAGCCCGCAGCATGTGGTGCGCACC
ACGGTGTTTTTGGTTGATCTCGCTGACTTCGCCAAGGTCAATGCCATCTATGCCGAAACCTTCGGCCATGGCGTTGAGCC
AGCGCGGGCTTGTGTTCAAGTGGCAGCTCTGCCGAAGGGAGCCAAGGTGGAGATCGATTGCATCGCTGTCTTGAGCTAA

Upstream 100 bases:

>100_bases
GCTGTGAACCAGCCTTGGTGTTGGCCGAAATCCGGCGCCGTAAAGACGTGTTCTGAGCTGGGAAGTGGGCAGGGATGATG
GAGCCAGATGGTTCATCCCG

Downstream 100 bases:

>100_bases
GCCCGTTGGCTCTGGTGAAGCAGCAATGCCATCAGGATCAGACCTGCTCCCACGATGGCTTTGGCCCCAAGCGGTTCAGC
TAGTAGTAGGTGGGCCCCAG

Product: putative translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MSAAPLEAVETQAAPAPVGPYNQAVKAGGMLFCSGQIPLDPASGTMVGGGDVEAETRQVLSNLKAVLTAAGCSPQHVVRT
TVFLVDLADFAKVNAIYAETFGHGVEPARACVQVAALPKGAKVEIDCIAVLS

Sequences:

>Translated_132_residues
MSAAPLEAVETQAAPAPVGPYNQAVKAGGMLFCSGQIPLDPASGTMVGGGDVEAETRQVLSNLKAVLTAAGCSPQHVVRT
TVFLVDLADFAKVNAIYAETFGHGVEPARACVQVAALPKGAKVEIDCIAVLS
>Mature_131_residues
SAAPLEAVETQAAPAPVGPYNQAVKAGGMLFCSGQIPLDPASGTMVGGGDVEAETRQVLSNLKAVLTAAGCSPQHVVRTT
VFLVDLADFAKVNAIYAETFGHGVEPARACVQVAALPKGAKVEIDCIAVLS

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=130, Percent_Identity=46.9230769230769, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=46.8253968253968, Blast_Score=115, Evalue=8e-28,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=48.4126984126984, Blast_Score=115, Evalue=9e-28,
Organism=Escherichia coli, GI1787245, Length=114, Percent_Identity=34.2105263157895, Blast_Score=70, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=46.7741935483871, Blast_Score=108, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=47.5409836065574, Blast_Score=108, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71982068, Length=117, Percent_Identity=49.5726495726496, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6322138, Length=125, Percent_Identity=40, Blast_Score=96, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6320899, Length=105, Percent_Identity=41.9047619047619, Blast_Score=84, Evalue=5e-18,
Organism=Drosophila melanogaster, GI19921376, Length=130, Percent_Identity=44.6153846153846, Blast_Score=101, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13407; Mature: 13275

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAPLEAVETQAAPAPVGPYNQAVKAGGMLFCSGQIPLDPASGTMVGGGDVEAETRQVL
CCCCCCHHHHCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCCCCCEECCCCCCHHHHHHH
SNLKAVLTAAGCSPQHVVRTTVFLVDLADFAKVNAIYAETFGHGVEPARACVQVAALPKG
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
AKVEIDCIAVLS
CEEEEEEEEEEC
>Mature Secondary Structure 
SAAPLEAVETQAAPAPVGPYNQAVKAGGMLFCSGQIPLDPASGTMVGGGDVEAETRQVL
CCCCCHHHHCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCCCCCEECCCCCCHHHHHHH
SNLKAVLTAAGCSPQHVVRTTVFLVDLADFAKVNAIYAETFGHGVEPARACVQVAALPKG
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
AKVEIDCIAVLS
CEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7787182; 8590279; 8905231 [H]