| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is nfrC [C]
Identifier: 148241813
GI number: 148241813
Start: 644281
End: 645396
Strand: Direct
Name: nfrC [C]
Synonym: SynRCC307_0714
Alternate gene names: 148241813
Gene position: 644281-645396 (Clockwise)
Preceding gene: 148241811
Following gene: 148241815
Centisome position: 28.96
GC content: 63.62
Gene sequence:
>1116_bases TTGGCCCAACCCGCACGCGTCACCCTGGTGCTGGGCACCCGCCCTGAGGCCATCAAGATGGCCCCGGTCATCCGTGCATT CCAGCAGTCCGAGCGCTTTGAAGCCCGTGTGGTGCTGACCGGTCAGCACCGGGAGATGGTGGCTCAGGTGATGGCCCTCT TTGCCCTGGAGGCCCAGCGGGATCTGGCCTTGATGGCCCCAAAGCAAACCCTCACCCATGTCACTTGCGCAGCACTGGAG GGGTTGCGCCATGAATTCGCCGAGCACCGCCCTGATCTGGTGCTGGTGCAGGGGGACACCACCACGGCTTTTGCCGCTGC CCTGGCCGCCTTTTACGACCAGATTCCGGTTGGCCACGTGGAAGCCGGCCTGCGCACTGACAACATCTATGACCCCTTCC CAGAAGAGGCGAATCGCCGGCTGATCTCCCAGCTGGCTCAACTGCATTTCGCGCCCACCGAGCAGGCCGCCGCCAACCTG CAGGCCTCGGGCGTCGTGGGCGCCGTGCATGTCACCGGCAACACGGTGATTGACGCCCTGCTGCAGATGGCAGCAGCTGC GCCGAGTTGCCCGATCCCTGGGTTGGATTGGGAGTCTCAGCGGGTGATCTTGGCCACGGTGCATCGCCGTGAGAACTGGG GTGAGCCACTGCAATCGATTGCTGATGGCTTTCTGCGGGTGTTGGACAGCCATCCCGATACGGCCTTGCTGTTGCCGTTG CACAAAAATCCCACCGTGCGCGAGCCCCTGCAGCAACTCTTGGGCTCCCATCCCCGGGTGTTTCTCTGTGAGCCGCTCGA TTACGACAGCCTGGTGGCAGCCATTCGCGGCTCCACCTTGCTGCTGACCGATTCCGGTGGTTTGCAGGAAGAAGCCCCAT CGCTGGGCAAGCCCGTGCTCGTGCTGCGCCGCACCACTGAGCGGCCTGAAGCGGTTCAGGCGGGCACGGCCAAACTCATT GGAACTGAGAGCGATGCCATCGCCACGGAGGCGTCTGTGCTGCTGGATCAGCCTGAGGCCTACGAGGCCATGGCCAGGGC CCATAACCCCTTTGGCGATGGCAAAGCCAGTGAACGGATTGAGGCCATCAGCGCTGAATTTTTGGCCAGCCGCTAA
Upstream 100 bases:
>100_bases AGCGGCGGCAGATCACTCATCCCGCAGGTGCAGATTCCTGCAGCTTGGCAAGGGCAAACCGGTTTGGGGTCCTTAAAGTT CGCGGGATTGCCAAAGCCCG
Downstream 100 bases:
>100_bases TCGCCCTCTCGCTTGCTCGCCCAGGGCGGCAGATCAATAAACACCTTTTCGCCGGGCTCAAGTCCTTTCAACACTTGGGT TTGACGGCCGCTGGAGTTGC
Product: UDP-N-acetylglucosamine 2-epimerase
Products: NA
Alternate protein names: UDP-GlcNAc-2-epimerase [H]
Number of amino acids: Translated: 371; Mature: 370
Protein sequence:
>371_residues MAQPARVTLVLGTRPEAIKMAPVIRAFQQSERFEARVVLTGQHREMVAQVMALFALEAQRDLALMAPKQTLTHVTCAALE GLRHEFAEHRPDLVLVQGDTTTAFAAALAAFYDQIPVGHVEAGLRTDNIYDPFPEEANRRLISQLAQLHFAPTEQAAANL QASGVVGAVHVTGNTVIDALLQMAAAAPSCPIPGLDWESQRVILATVHRRENWGEPLQSIADGFLRVLDSHPDTALLLPL HKNPTVREPLQQLLGSHPRVFLCEPLDYDSLVAAIRGSTLLLTDSGGLQEEAPSLGKPVLVLRRTTERPEAVQAGTAKLI GTESDAIATEASVLLDQPEAYEAMARAHNPFGDGKASERIEAISAEFLASR
Sequences:
>Translated_371_residues MAQPARVTLVLGTRPEAIKMAPVIRAFQQSERFEARVVLTGQHREMVAQVMALFALEAQRDLALMAPKQTLTHVTCAALE GLRHEFAEHRPDLVLVQGDTTTAFAAALAAFYDQIPVGHVEAGLRTDNIYDPFPEEANRRLISQLAQLHFAPTEQAAANL QASGVVGAVHVTGNTVIDALLQMAAAAPSCPIPGLDWESQRVILATVHRRENWGEPLQSIADGFLRVLDSHPDTALLLPL HKNPTVREPLQQLLGSHPRVFLCEPLDYDSLVAAIRGSTLLLTDSGGLQEEAPSLGKPVLVLRRTTERPEAVQAGTAKLI GTESDAIATEASVLLDQPEAYEAMARAHNPFGDGKASERIEAISAEFLASR >Mature_370_residues AQPARVTLVLGTRPEAIKMAPVIRAFQQSERFEARVVLTGQHREMVAQVMALFALEAQRDLALMAPKQTLTHVTCAALEG LRHEFAEHRPDLVLVQGDTTTAFAAALAAFYDQIPVGHVEAGLRTDNIYDPFPEEANRRLISQLAQLHFAPTEQAAANLQ ASGVVGAVHVTGNTVIDALLQMAAAAPSCPIPGLDWESQRVILATVHRRENWGEPLQSIADGFLRVLDSHPDTALLLPLH KNPTVREPLQQLLGSHPRVFLCEPLDYDSLVAAIRGSTLLLTDSGGLQEEAPSLGKPVLVLRRTTERPEAVQAGTAKLIG TESDAIATEASVLLDQPEAYEAMARAHNPFGDGKASERIEAISAEFLASR
Specific function: Catalyzes The Reversible Epimerization At C-2 Of UDP-N- Acetylglucosamine (UDP-Glcnac) And Thereby Provides Bacteria With UDP-N-Acetylmannosamine (UDP-Mannac), The Activated Donor Of Mannac Residues. Also Involved In Bacteriophage N4 Adsorption. [C]
COG id: COG0381
COG function: function code M; UDP-N-acetylglucosamine 2-epimerase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UDP-N-acetylglucosamine 2-epimerase family [H]
Homologues:
Organism=Escherichia coli, GI48994967, Length=365, Percent_Identity=49.8630136986301, Blast_Score=339, Evalue=1e-94,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003331 [H]
Pfam domain/function: PF02350 Epimerase_2 [H]
EC number: =5.1.3.14 [H]
Molecular weight: Translated: 40128; Mature: 39997
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQPARVTLVLGTRPEAIKMAPVIRAFQQSERFEARVVLTGQHREMVAQVMALFALEAQR CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHCC DLALMAPKQTLTHVTCAALEGLRHEFAEHRPDLVLVQGDTTTAFAAALAAFYDQIPVGHV CCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCHH EAGLRTDNIYDPFPEEANRRLISQLAQLHFAPTEQAAANLQASGVVGAVHVTGNTVIDAL HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEEECCHHHHHHH LQMAAAAPSCPIPGLDWESQRVILATVHRRENWGEPLQSIADGFLRVLDSHPDTALLLPL HHHHHCCCCCCCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEE HKNPTVREPLQQLLGSHPRVFLCEPLDYDSLVAAIRGSTLLLTDSGGLQEEAPSLGKPVL CCCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCEE VLRRTTERPEAVQAGTAKLIGTESDAIATEASVLLDQPEAYEAMARAHNPFGDGKASERI EEEECCCCCCHHHCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHH EAISAEFLASR HHHHHHHHHCC >Mature Secondary Structure AQPARVTLVLGTRPEAIKMAPVIRAFQQSERFEARVVLTGQHREMVAQVMALFALEAQR CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHCC DLALMAPKQTLTHVTCAALEGLRHEFAEHRPDLVLVQGDTTTAFAAALAAFYDQIPVGHV CCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCHH EAGLRTDNIYDPFPEEANRRLISQLAQLHFAPTEQAAANLQASGVVGAVHVTGNTVIDAL HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEEECCHHHHHHH LQMAAAAPSCPIPGLDWESQRVILATVHRRENWGEPLQSIADGFLRVLDSHPDTALLLPL HHHHHCCCCCCCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEE HKNPTVREPLQQLLGSHPRVFLCEPLDYDSLVAAIRGSTLLLTDSGGLQEEAPSLGKPVL CCCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCEE VLRRTTERPEAVQAGTAKLIGTESDAIATEASVLLDQPEAYEAMARAHNPFGDGKASERI EEEECCCCCCHHHCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHH EAISAEFLASR HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]