Click here to switch to the map view.

The map label for this gene is glcD [H]

Identifier: 148241707

GI number: 148241707

Start: 541633

End: 542973

Strand: Direct

Name: glcD [H]

Synonym: SynRCC307_0608

Alternate gene names: 148241707

Gene position: 541633-542973 (Clockwise)

Preceding gene: 148241706

Following gene: 148241712

Centisome position: 24.34

GC content: 66.67

Gene sequence:

>1341_bases
ATGGGTCTTCGCGACCTCAGAGCTGAGCTGTCCCAGCTCGATGTGATTGATCAAGGGCCGCTGCTGCAGCAGCTCTCCCA
CGACCAATTCAGTTTTTCGCCTTCGTTGGTGCCGCGCCTGCAGCCCTGCTGCGCCGATCTGGTGGTGCGTGTTTCCAGCA
CCGCGGAGGTGGTGCAAGTGGCAGGTGCTTGTGCTCGCCATGGCGTGCCGCTCACCCCACGGGGGGCCGGCACCGGCAAC
TACGGCCAAGCCGTTCCTTTGGAAGGCGGCGTGGTTCTCGACACCTCGGCGATGCAGCAGGTGCGGCAGTTTGACCCGCT
CAGCGGCGTGCTCACCGCAGAGCCGGGCTGCCGATTGCTCGAGCTCGATCGCTATCTGCAGCCCCAGGGTTGGGCCTTGC
GTTTGGCCCCCAGCACCTGGCGCACCGCCAGCTTGGGGGGCTTCATCGCCGGCGGCTCCAGTGGGGTGGGCAGTGTGCGC
TGGGGGCTCTTGCGCGATCCAGGCAATCTGCTGGGCCTGGAGGTGGTGACGGTTGAGCCGGAGCCGCGGGTGCTGCAACT
CGATGCCGCTGCCGCCCGCGGGCTGAACCATGCCTATGGCAGCAACGGCATCTTCACGGCGATCACGGTGCCAACGGCGC
CATGGCAGGACTGGCAAGAAGTGGCGCTGGTGGCAGAGAGCTCAGCGGCTGCCTTGGCCTTAGGGGAGCAACTCACGGCT
GCGGCGCTGGAGATCGATGGCCTCTGTTTTTTGGAGCGGCGCTTGCTGGAGCGCATGCCCGCCCTGGGCAGCAGCCCTTG
GCCAAGTGGTGATGCCCTGCTGCTGCTGGCGGCTCCGGCGGCATTGCCGCTGATTGAAACCATGGCCAGCGCTGCCGGCG
CCGAGCTCTGCTGGCAGCGGCCGCAATGGCCCCCCCGCGGCTTGCTGCTGCGTGAGCTCTGCTGGAACCACACCACCTTG
CAGGTGCGCGCCAATGCGCCGCAGTTCACCTATCAACTGGTGCTGTTGCCCGATCCAGTAGGGCCCTTCATCGAGGCCAT
CGCGGAGCGCTGGCCGGGCTGGGTGCATTGGCATCTCGAGCGGGTTCGCCAAGGCGGACGGCTGCGCTGGGTGGGTTTGT
TGCCCTTCCAATGGCGCGGAGAAGCAGCCCTCGCGGAGCTCAATGGGGCGCTGAAAGCAGCCGGAGGATTGGTCTTTAAC
GCCCACGCCATCACGGTGGAAGACGGCGGTTTGGGTGTGGTGGATGCCGATCAGGTGGCCGCCAAACGGGCCTATGACCC
AGCCGGGCTCTGCAATCCAGGCAAGTTGCGGGGCTGGAGCTCAGGGGCAGTCGAGGCTTAG

Upstream 100 bases:

>100_bases
CATCGGGTTTGTTGGCTCAGTTGCCCTTGCCCCGCTATTCCCTCGAGACCCTCGCTGTGGCTGGACAATTCATCGTGCTG
CGCGCTGAGAGCGTGGATTG

Downstream 100 bases:

>100_bases
GCGCGTTTCCCCTTTGGCTTTGCGGCAGAGGGTGATTTGATCATCGCGATCGAGCAGGGCGCCGGTGAAATCAGCACCCT
CGATCTCGGCTTTGGCAAAG

Product: FAD/FMN-containing dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MGLRDLRAELSQLDVIDQGPLLQQLSHDQFSFSPSLVPRLQPCCADLVVRVSSTAEVVQVAGACARHGVPLTPRGAGTGN
YGQAVPLEGGVVLDTSAMQQVRQFDPLSGVLTAEPGCRLLELDRYLQPQGWALRLAPSTWRTASLGGFIAGGSSGVGSVR
WGLLRDPGNLLGLEVVTVEPEPRVLQLDAAAARGLNHAYGSNGIFTAITVPTAPWQDWQEVALVAESSAAALALGEQLTA
AALEIDGLCFLERRLLERMPALGSSPWPSGDALLLLAAPAALPLIETMASAAGAELCWQRPQWPPRGLLLRELCWNHTTL
QVRANAPQFTYQLVLLPDPVGPFIEAIAERWPGWVHWHLERVRQGGRLRWVGLLPFQWRGEAALAELNGALKAAGGLVFN
AHAITVEDGGLGVVDADQVAAKRAYDPAGLCNPGKLRGWSSGAVEA

Sequences:

>Translated_446_residues
MGLRDLRAELSQLDVIDQGPLLQQLSHDQFSFSPSLVPRLQPCCADLVVRVSSTAEVVQVAGACARHGVPLTPRGAGTGN
YGQAVPLEGGVVLDTSAMQQVRQFDPLSGVLTAEPGCRLLELDRYLQPQGWALRLAPSTWRTASLGGFIAGGSSGVGSVR
WGLLRDPGNLLGLEVVTVEPEPRVLQLDAAAARGLNHAYGSNGIFTAITVPTAPWQDWQEVALVAESSAAALALGEQLTA
AALEIDGLCFLERRLLERMPALGSSPWPSGDALLLLAAPAALPLIETMASAAGAELCWQRPQWPPRGLLLRELCWNHTTL
QVRANAPQFTYQLVLLPDPVGPFIEAIAERWPGWVHWHLERVRQGGRLRWVGLLPFQWRGEAALAELNGALKAAGGLVFN
AHAITVEDGGLGVVDADQVAAKRAYDPAGLCNPGKLRGWSSGAVEA
>Mature_445_residues
GLRDLRAELSQLDVIDQGPLLQQLSHDQFSFSPSLVPRLQPCCADLVVRVSSTAEVVQVAGACARHGVPLTPRGAGTGNY
GQAVPLEGGVVLDTSAMQQVRQFDPLSGVLTAEPGCRLLELDRYLQPQGWALRLAPSTWRTASLGGFIAGGSSGVGSVRW
GLLRDPGNLLGLEVVTVEPEPRVLQLDAAAARGLNHAYGSNGIFTAITVPTAPWQDWQEVALVAESSAAALALGEQLTAA
ALEIDGLCFLERRLLERMPALGSSPWPSGDALLLLAAPAALPLIETMASAAGAELCWQRPQWPPRGLLLRELCWNHTTLQ
VRANAPQFTYQLVLLPDPVGPFIEAIAERWPGWVHWHLERVRQGGRLRWVGLLPFQWRGEAALAELNGALKAAGGLVFNA
HAITVEDGGLGVVDADQVAAKRAYDPAGLCNPGKLRGWSSGAVEA

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=273, Percent_Identity=27.1062271062271, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI37595754, Length=212, Percent_Identity=30.188679245283, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI37595756, Length=234, Percent_Identity=29.9145299145299, Blast_Score=76, Evalue=6e-14,
Organism=Escherichia coli, GI1789351, Length=198, Percent_Identity=31.3131313131313, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787977, Length=146, Percent_Identity=34.9315068493151, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17534361, Length=177, Percent_Identity=26.5536723163842, Blast_Score=69, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6320023, Length=210, Percent_Identity=25.7142857142857, Blast_Score=78, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6320764, Length=132, Percent_Identity=28.7878787878788, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI18921117, Length=172, Percent_Identity=28.4883720930233, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24639277, Length=172, Percent_Identity=28.4883720930233, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24639275, Length=172, Percent_Identity=28.4883720930233, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 47541; Mature: 47410

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLRDLRAELSQLDVIDQGPLLQQLSHDQFSFSPSLVPRLQPCCADLVVRVSSTAEVVQV
CCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHH
AGACARHGVPLTPRGAGTGNYGQAVPLEGGVVLDTSAMQQVRQFDPLSGVLTAEPGCRLL
HHHHHHCCCCCCCCCCCCCCCCCEECCCCCEEEEHHHHHHHHHCCCCCCEEECCCCCEEE
ELDRYLQPQGWALRLAPSTWRTASLGGFIAGGSSGVGSVRWGLLRDPGNLLGLEVVTVEP
EHHHHCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCEEEEEEEEECC
EPRVLQLDAAAARGLNHAYGSNGIFTAITVPTAPWQDWQEVALVAESSAAALALGEQLTA
CCCEEEEEHHHHCCCCHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
AALEIDGLCFLERRLLERMPALGSSPWPSGDALLLLAAPAALPLIETMASAAGAELCWQR
HHHEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCHHHHHCC
PQWPPRGLLLRELCWNHTTLQVRANAPQFTYQLVLLPDPVGPFIEAIAERWPGWVHWHLE
CCCCCHHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHCCCEEHHHHH
RVRQGGRLRWVGLLPFQWRGEAALAELNGALKAAGGLVFNAHAITVEDGGLGVVDADQVA
HHHCCCCEEEEEECCEEECCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEHHHHH
AKRAYDPAGLCNPGKLRGWSSGAVEA
HHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GLRDLRAELSQLDVIDQGPLLQQLSHDQFSFSPSLVPRLQPCCADLVVRVSSTAEVVQV
CHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHH
AGACARHGVPLTPRGAGTGNYGQAVPLEGGVVLDTSAMQQVRQFDPLSGVLTAEPGCRLL
HHHHHHCCCCCCCCCCCCCCCCCEECCCCCEEEEHHHHHHHHHCCCCCCEEECCCCCEEE
ELDRYLQPQGWALRLAPSTWRTASLGGFIAGGSSGVGSVRWGLLRDPGNLLGLEVVTVEP
EHHHHCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCEEEEEEEEECC
EPRVLQLDAAAARGLNHAYGSNGIFTAITVPTAPWQDWQEVALVAESSAAALALGEQLTA
CCCEEEEEHHHHCCCCHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
AALEIDGLCFLERRLLERMPALGSSPWPSGDALLLLAAPAALPLIETMASAAGAELCWQR
HHHEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCHHHHHCC
PQWPPRGLLLRELCWNHTTLQVRANAPQFTYQLVLLPDPVGPFIEAIAERWPGWVHWHLE
CCCCCHHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHCCCEEHHHHH
RVRQGGRLRWVGLLPFQWRGEAALAELNGALKAAGGLVFNAHAITVEDGGLGVVDADQVA
HHHCCCCEEEEEECCEEECCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEHHHHH
AKRAYDPAGLCNPGKLRGWSSGAVEA
HHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]