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The map label for this gene is yifB [H]

Identifier: 148241449

GI number: 148241449

Start: 337817

End: 339382

Strand: Direct

Name: yifB [H]

Synonym: SynRCC307_0350

Alternate gene names: 148241449

Gene position: 337817-339382 (Clockwise)

Preceding gene: 148241445

Following gene: 148241450

Centisome position: 15.18

GC content: 66.16

Gene sequence:

>1566_bases
GTGCTCGCTTTCTGTGGTGCGGCTGCCCTGCTGGGGTTAGAAGCCCATCCTGTTGCTGTTGAGGTCGACCTCGCTCCGGG
TTTGCCGGGGTTCCAGCTGGTGGGGCTGAGTGATGCCAGTGGCCGCGATGCCCGTGAGCGGGTCCGTTCAGCCCTGCGCA
ACAGCGGCTTTCGGCCGCCGCAAAGCCGGGTGGTGGTCAGCCTTGCTCCAGCGGATCTGCCCAAACAGGGAGCCGGCTTT
GATTTAGCGATTGCTTTGGCGTTGCTGGTCGCCTCCGGTCAGCTAGATCCTGCGCGGCTGCAGGCCCATTGGGCTTTTGG
TGAGTTGTCTCTCGATGGGAGCCTGCGCCCTGTTCAGGGGGTTTTGGCTGTTGTTTTGGCAGCGCAGCAGGCTGCCGCCT
CAGGTTTGATCCTTCCGCAAGCCAATGCCAGCGAGGCGCCGGTGCTCGACGCGCTGCCCCTGTATCCAGCCAGCAGCCTC
AGCGCTGTGGTGGCGGCGTTGCAAGGCCGAGCCTCCTGGTCCTCCCGGCCCCAGCTGCATCCATGCCAGCCGCCTTTCGT
AGGGGTTGATCTGCAGCAGGTGCTCGGCCAAAGCCAGGGACGCCGCGCTGCTGAGCTGGCGGCGGCCGGTGGGCATCACC
TGTTGCTGGTGGGACCACCAGGCTGCGGCAAAACCATGTTGGCCTCGGCCTTGCTTGGCCTCCTGCCTCCGCTGGATAAC
GAGCAGGCCCTGATGGTGAGTCACATCCACACGATGGTGGGCCTGCGATCGGCTGGAGCTCCGCTGCTGCACCACCCCCC
CTTTCGCGCGCCGCACCACAGCAGCACAGCCGCAGCCTTGGTGGGTGGGGGCCTTGGTCCCAGGCCTGGTGAGCTCACCC
TCGCCCATCACGGCCTGCTGTTTCTCGATGAGCTGGCGGAATTTCGGCGCCCTGTGCTCGACCAGTTGCGGCAGCCCTTG
GAGAGCGGTGAGGTGCTCATTGCTCGCGCCAAGCAGGCCCTGCGTTTTCCCTCCCAGACGTTGCTGGTGGGGGCCACCAA
CCCTTGCCCATGCGGCTGGTGGGGGGATCCACGTCAGGGCTGTTGCTGCGGACAGCACCGCCGGCAGCAGTATTGGAACC
GCATCAGTGGTCCATTGCTGGATCGCTTTGATTTGCAGGTGTCCTTGCGCAGTGATGCCTGCGCCAGCCCATCCAGCAGC
CCGCCAGAGGCCACCGCCGTGGTGGCGCGGCGGGTTCACAGGGCACGCCAAAGGATGCGGCAGCGCAATCCGTCGGGTCG
CTGCAATGGGCGCTTAACGGCAGCCCAGCTCAACGGCTGTGTGCAGTTGAGCCCCCAGGCCGAAGGCTGGTGGAGGGATG
AGCGGCTGGCTCACCTGTTGAGCGGGCGCCGGCGGCATCGTCTGCTGGCGGTTGCCCAAACCCTGGCGGATTTGGCGGCG
AGCCCTGTGGTGGAACCGCAGCATTTGGCTGAAGCCCTGTTGTTTCGCTCGCTGGAGCGCTCAGTCGCCCGTGATGGTGG
TCTCGACCCAGGCTTGGCCGGGCGGCCTGGTGTCGCAGCTGATTGA

Upstream 100 bases:

>100_bases
AGCTTCGATTCGCCGCCTTGAGCGGCTGCGCTACCGCCTGCAGCAGCGCAACAGCTGAGCCCCAGCGGGGAGTCATGGCA
GCAGCGTTGGGCCATCGCCT

Downstream 100 bases:

>100_bases
GCCATCGGCGCCGGGAGCGCAATTCACCTCCAGATGGGTGTCGGGATCCCAGGGGTCCTGGTTGTAGATCAGGCGCTGAT
TGAGCACCTCAGCCCGTGCC

Product: ATPase with chaperone activity

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 521

Protein sequence:

>521_residues
MLAFCGAAALLGLEAHPVAVEVDLAPGLPGFQLVGLSDASGRDARERVRSALRNSGFRPPQSRVVVSLAPADLPKQGAGF
DLAIALALLVASGQLDPARLQAHWAFGELSLDGSLRPVQGVLAVVLAAQQAAASGLILPQANASEAPVLDALPLYPASSL
SAVVAALQGRASWSSRPQLHPCQPPFVGVDLQQVLGQSQGRRAAELAAAGGHHLLLVGPPGCGKTMLASALLGLLPPLDN
EQALMVSHIHTMVGLRSAGAPLLHHPPFRAPHHSSTAAALVGGGLGPRPGELTLAHHGLLFLDELAEFRRPVLDQLRQPL
ESGEVLIARAKQALRFPSQTLLVGATNPCPCGWWGDPRQGCCCGQHRRQQYWNRISGPLLDRFDLQVSLRSDACASPSSS
PPEATAVVARRVHRARQRMRQRNPSGRCNGRLTAAQLNGCVQLSPQAEGWWRDERLAHLLSGRRRHRLLAVAQTLADLAA
SPVVEPQHLAEALLFRSLERSVARDGGLDPGLAGRPGVAAD

Sequences:

>Translated_521_residues
MLAFCGAAALLGLEAHPVAVEVDLAPGLPGFQLVGLSDASGRDARERVRSALRNSGFRPPQSRVVVSLAPADLPKQGAGF
DLAIALALLVASGQLDPARLQAHWAFGELSLDGSLRPVQGVLAVVLAAQQAAASGLILPQANASEAPVLDALPLYPASSL
SAVVAALQGRASWSSRPQLHPCQPPFVGVDLQQVLGQSQGRRAAELAAAGGHHLLLVGPPGCGKTMLASALLGLLPPLDN
EQALMVSHIHTMVGLRSAGAPLLHHPPFRAPHHSSTAAALVGGGLGPRPGELTLAHHGLLFLDELAEFRRPVLDQLRQPL
ESGEVLIARAKQALRFPSQTLLVGATNPCPCGWWGDPRQGCCCGQHRRQQYWNRISGPLLDRFDLQVSLRSDACASPSSS
PPEATAVVARRVHRARQRMRQRNPSGRCNGRLTAAQLNGCVQLSPQAEGWWRDERLAHLLSGRRRHRLLAVAQTLADLAA
SPVVEPQHLAEALLFRSLERSVARDGGLDPGLAGRPGVAAD
>Mature_521_residues
MLAFCGAAALLGLEAHPVAVEVDLAPGLPGFQLVGLSDASGRDARERVRSALRNSGFRPPQSRVVVSLAPADLPKQGAGF
DLAIALALLVASGQLDPARLQAHWAFGELSLDGSLRPVQGVLAVVLAAQQAAASGLILPQANASEAPVLDALPLYPASSL
SAVVAALQGRASWSSRPQLHPCQPPFVGVDLQQVLGQSQGRRAAELAAAGGHHLLLVGPPGCGKTMLASALLGLLPPLDN
EQALMVSHIHTMVGLRSAGAPLLHHPPFRAPHHSSTAAALVGGGLGPRPGELTLAHHGLLFLDELAEFRRPVLDQLRQPL
ESGEVLIARAKQALRFPSQTLLVGATNPCPCGWWGDPRQGCCCGQHRRQQYWNRISGPLLDRFDLQVSLRSDACASPSSS
PPEATAVVARRVHRARQRMRQRNPSGRCNGRLTAAQLNGCVQLSPQAEGWWRDERLAHLLSGRRRHRLLAVAQTLADLAA
SPVVEPQHLAEALLFRSLERSVARDGGLDPGLAGRPGVAAD

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=504, Percent_Identity=42.0634920634921, Blast_Score=359, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 55018; Mature: 55018

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAFCGAAALLGLEAHPVAVEVDLAPGLPGFQLVGLSDASGRDARERVRSALRNSGFRPP
CCCHHCHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
QSRVVVSLAPADLPKQGAGFDLAIALALLVASGQLDPARLQAHWAFGELSLDGSLRPVQG
CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHEEEEEEEEEEECCCCCHHHH
VLAVVLAAQQAAASGLILPQANASEAPVLDALPLYPASSLSAVVAALQGRASWSSRPQLH
HHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
PCQPPFVGVDLQQVLGQSQGRRAAELAAAGGHHLLLVGPPGCGKTMLASALLGLLPPLDN
CCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC
EQALMVSHIHTMVGLRSAGAPLLHHPPFRAPHHSSTAAALVGGGLGPRPGELTLAHHGLL
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEECCCHH
FLDELAEFRRPVLDQLRQPLESGEVLIARAKQALRFPSQTLLVGATNPCPCGWWGDPRQG
HHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
CCCGQHRRQQYWNRISGPLLDRFDLQVSLRSDACASPSSSPPEATAVVARRVHRARQRMR
CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
QRNPSGRCNGRLTAAQLNGCVQLSPQAEGWWRDERLAHLLSGRRRHRLLAVAQTLADLAA
HCCCCCCCCCEEEHEECCCEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
SPVVEPQHLAEALLFRSLERSVARDGGLDPGLAGRPGVAAD
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLAFCGAAALLGLEAHPVAVEVDLAPGLPGFQLVGLSDASGRDARERVRSALRNSGFRPP
CCCHHCHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
QSRVVVSLAPADLPKQGAGFDLAIALALLVASGQLDPARLQAHWAFGELSLDGSLRPVQG
CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHEEEEEEEEEEECCCCCHHHH
VLAVVLAAQQAAASGLILPQANASEAPVLDALPLYPASSLSAVVAALQGRASWSSRPQLH
HHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
PCQPPFVGVDLQQVLGQSQGRRAAELAAAGGHHLLLVGPPGCGKTMLASALLGLLPPLDN
CCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC
EQALMVSHIHTMVGLRSAGAPLLHHPPFRAPHHSSTAAALVGGGLGPRPGELTLAHHGLL
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEECCCHH
FLDELAEFRRPVLDQLRQPLESGEVLIARAKQALRFPSQTLLVGATNPCPCGWWGDPRQG
HHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
CCCGQHRRQQYWNRISGPLLDRFDLQVSLRSDACASPSSSPPEATAVVARRVHRARQRMR
CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
QRNPSGRCNGRLTAAQLNGCVQLSPQAEGWWRDERLAHLLSGRRRHRLLAVAQTLADLAA
HCCCCCCCCCEEEHEECCCEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
SPVVEPQHLAEALLFRSLERSVARDGGLDPGLAGRPGVAAD
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]