| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241394
Identifier: 148241394
GI number: 148241394
Start: 291030
End: 292322
Strand: Direct
Name: 148241394
Synonym: SynRCC307_0295
Alternate gene names: NA
Gene position: 291030-292322 (Clockwise)
Preceding gene: 148241392
Following gene: 148241395
Centisome position: 13.08
GC content: 62.03
Gene sequence:
>1293_bases GTGACCTCAGCCTGCAGCACTCCCCAGCCGTGCGATGGCCTGATTAGGTTTTGCAGCAACTCCAGCCCCACTGTGAGCGA GTCCGATCACTCCGCTGAGGCCTTGGAGGCGCGCTGGCATCAGCAGCTCGCCGAGATTCCTGAGCAGGCTTGGGATGCTC TGGTGGCCTCCGCTGGACTGCCGTTCTACCGCTGGGCTTGGCTGGAAGCCTTGGAGCGCTCCGGAAGCATTGTTCCCTCC CAGGGCTGGCAGGCTTGCCACCTCAGCCTGTGGCGCGAGCAACAGCTGATCGCCGTGGCGCCGCTCTACGTCAAAGGCCA TAGCTACGGCGAGTTCGTCTTTGATCAATCCTTCGCTCAACTCGCTGGACAGTTGGGCCTGCGCTACTACCCCAAGCTGC TGGGCATGAGCCCATTGAGCCCAATCTTGGGCTATCGCTTCTTCATTGCCAGCAACGAAGAGGAGGGCGCTTGCACCGCG TTGATGCTGCGCTTGATCGATCGCTTTTGCGAGCGCAACCAACTGCTGAGTTGCAACTTCCTCTATGTCGATCCGGCTTG GCGGCCCCACGCCGAAGCCGCTGGCTGCTCCGCCTGGCTCAATCAGCAGAGCCTGTGGAGCAATCCCGGTTACGGCAGCT TTGAGGACTACCTCGCCAGCTTTAACGCCAACCAACGCCGCAATATCCGCCGCGAACGCAAGGCCGTGCAGCAAGCGGGC CTGCAGGTGAGCGCCATTGCCGCGGAAGCGATCACGCCGGAGCTGCTGGAGCGCATGCATGGCTTTTATGAAGACCATTG CCGCCGCTGGGGCATGTGGGGCAGTAAGTACCTCACCGAAGAGTTCTTCTCACTGGCGCAGCAGTTGCGTCAGCACCTGG TGCTGTTCAGTGCCCATCGCCACGGGGAGGATCCCCATCAGCCCATCGCCATGAGCCTCTGCGTGCGGGAGGGCGATCAC CTCTGGGGCCGGTATTGGGGTTCAACGGTGGAGATCGACAATCTCCACTTTGAGGTCTGCTATTACGCGCCGATTGAATG GGCCATCGCTCAGGGCATTCGCCATTACGACCCAGGTGCCGGCGGTAGCCACAAGCGCCGCCGCGGTTTTGTGGCCCGAC CGCATGCCAGCTTGCACCGCTGGTATGAGCCCCAGTTCGCCGGCTTGATCAAGCGTTGGTTGCCATTGGCCAATGCCCAG CAGCTGGAGGAGGTGGAGGCGATTAACGCAGAGTTGCCGTTTAGCGGCCGCCAGATCCCGCTGGCCCCAGAGCAGGGCAA AATCGAAGGCTGA
Upstream 100 bases:
>100_bases GCAGCTCCAGCTGCGGCCGCAGCACCATCAACAGGTCTTCGGTCGGCGTGCTGGTTTGAGCCAGGATCAGTAAGGGCAGC AGCATCGAGCCGTTGCGGGT
Downstream 100 bases:
>100_bases GCCACCACCTGTCATGGCACCGCTCTCGCCCCAGCAGCGCCGCGAGCTGGATGATGCCCACTCCAACCGCACGATCGAGC TCGATCCCAGTGGCTATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 430; Mature: 429
Protein sequence:
>430_residues MTSACSTPQPCDGLIRFCSNSSPTVSESDHSAEALEARWHQQLAEIPEQAWDALVASAGLPFYRWAWLEALERSGSIVPS QGWQACHLSLWREQQLIAVAPLYVKGHSYGEFVFDQSFAQLAGQLGLRYYPKLLGMSPLSPILGYRFFIASNEEEGACTA LMLRLIDRFCERNQLLSCNFLYVDPAWRPHAEAAGCSAWLNQQSLWSNPGYGSFEDYLASFNANQRRNIRRERKAVQQAG LQVSAIAAEAITPELLERMHGFYEDHCRRWGMWGSKYLTEEFFSLAQQLRQHLVLFSAHRHGEDPHQPIAMSLCVREGDH LWGRYWGSTVEIDNLHFEVCYYAPIEWAIAQGIRHYDPGAGGSHKRRRGFVARPHASLHRWYEPQFAGLIKRWLPLANAQ QLEEVEAINAELPFSGRQIPLAPEQGKIEG
Sequences:
>Translated_430_residues MTSACSTPQPCDGLIRFCSNSSPTVSESDHSAEALEARWHQQLAEIPEQAWDALVASAGLPFYRWAWLEALERSGSIVPS QGWQACHLSLWREQQLIAVAPLYVKGHSYGEFVFDQSFAQLAGQLGLRYYPKLLGMSPLSPILGYRFFIASNEEEGACTA LMLRLIDRFCERNQLLSCNFLYVDPAWRPHAEAAGCSAWLNQQSLWSNPGYGSFEDYLASFNANQRRNIRRERKAVQQAG LQVSAIAAEAITPELLERMHGFYEDHCRRWGMWGSKYLTEEFFSLAQQLRQHLVLFSAHRHGEDPHQPIAMSLCVREGDH LWGRYWGSTVEIDNLHFEVCYYAPIEWAIAQGIRHYDPGAGGSHKRRRGFVARPHASLHRWYEPQFAGLIKRWLPLANAQ QLEEVEAINAELPFSGRQIPLAPEQGKIEG >Mature_429_residues TSACSTPQPCDGLIRFCSNSSPTVSESDHSAEALEARWHQQLAEIPEQAWDALVASAGLPFYRWAWLEALERSGSIVPSQ GWQACHLSLWREQQLIAVAPLYVKGHSYGEFVFDQSFAQLAGQLGLRYYPKLLGMSPLSPILGYRFFIASNEEEGACTAL MLRLIDRFCERNQLLSCNFLYVDPAWRPHAEAAGCSAWLNQQSLWSNPGYGSFEDYLASFNANQRRNIRRERKAVQQAGL QVSAIAAEAITPELLERMHGFYEDHCRRWGMWGSKYLTEEFFSLAQQLRQHLVLFSAHRHGEDPHQPIAMSLCVREGDHL WGRYWGSTVEIDNLHFEVCYYAPIEWAIAQGIRHYDPGAGGSHKRRRGFVARPHASLHRWYEPQFAGLIKRWLPLANAQQ LEEVEAINAELPFSGRQIPLAPEQGKIEG
Specific function: Unknown
COG id: COG3146
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48876; Mature: 48744
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: PS00615 C_TYPE_LECTIN_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSACSTPQPCDGLIRFCSNSSPTVSESDHSAEALEARWHQQLAEIPEQAWDALVASAGL CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PFYRWAWLEALERSGSIVPSQGWQACHLSLWREQQLIAVAPLYVKGHSYGEFVFDQSFAQ CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEECEEEECCCCCHHHHHHHHHH LAGQLGLRYYPKLLGMSPLSPILGYRFFIASNEEEGACTALMLRLIDRFCERNQLLSCNF HHHHHCHHHHHHHHCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE LYVDPAWRPHAEAAGCSAWLNQQSLWSNPGYGSFEDYLASFNANQRRNIRRERKAVQQAG EEECCCCCCCCCHHHHHHHHCHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHC LQVSAIAAEAITPELLERMHGFYEDHCRRWGMWGSKYLTEEFFSLAQQLRQHLVLFSAHR CEEEEHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH HGEDPHQPIAMSLCVREGDHLWGRYWGSTVEIDNLHFEVCYYAPIEWAIAQGIRHYDPGA CCCCCCCHHHHHHHHHCCCHHHHHHCCCEEEECCEEEEEEEECCHHHHHHHCHHHCCCCC GGSHKRRRGFVARPHASLHRWYEPQFAGLIKRWLPLANAQQLEEVEAINAELPFSGRQIP CCCCHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCC LAPEQGKIEG CCCCCCCCCC >Mature Secondary Structure TSACSTPQPCDGLIRFCSNSSPTVSESDHSAEALEARWHQQLAEIPEQAWDALVASAGL CCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PFYRWAWLEALERSGSIVPSQGWQACHLSLWREQQLIAVAPLYVKGHSYGEFVFDQSFAQ CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEECEEEECCCCCHHHHHHHHHH LAGQLGLRYYPKLLGMSPLSPILGYRFFIASNEEEGACTALMLRLIDRFCERNQLLSCNF HHHHHCHHHHHHHHCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE LYVDPAWRPHAEAAGCSAWLNQQSLWSNPGYGSFEDYLASFNANQRRNIRRERKAVQQAG EEECCCCCCCCCHHHHHHHHCHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHC LQVSAIAAEAITPELLERMHGFYEDHCRRWGMWGSKYLTEEFFSLAQQLRQHLVLFSAHR CEEEEHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH HGEDPHQPIAMSLCVREGDHLWGRYWGSTVEIDNLHFEVCYYAPIEWAIAQGIRHYDPGA CCCCCCCHHHHHHHHHCCCHHHHHHCCCEEEECCEEEEEEEECCHHHHHHHCHHHCCCCC GGSHKRRRGFVARPHASLHRWYEPQFAGLIKRWLPLANAQQLEEVEAINAELPFSGRQIP CCCCHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCC LAPEQGKIEG CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA