| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is selD [H]
Identifier: 148241259
GI number: 148241259
Start: 156171
End: 158213
Strand: Direct
Name: selD [H]
Synonym: SynRCC307_0160
Alternate gene names: 148241259
Gene position: 156171-158213 (Clockwise)
Preceding gene: 148241258
Following gene: 148241260
Centisome position: 7.02
GC content: 64.07
Gene sequence:
>2043_bases ATGGCAGCAGGCCAACCCCACCGGCTACCGGTGAGCCATCTGCTGCTGGCCGGAGGAGGCCATAGCCATGCCCTGTTGCT GCGGCAATGGGCGATGCGGCCGTCCACGCGGCCTGCGGTTGAGGCCATCACGTTGGTGAGTGCTCAGCCCACCAGCCTGT ATTCCGGCTTGATCCCTGCATGCATCAGTGGTGCTCTTGCGCCTAAGGCTTGTGTCCTTGACGTCTGGGGCCTTTGCCGG GCCGCAGCGGTCAGCTTTGTGCAGGCCACGGTCACTGGCTTGGACACCGCCAACCGGCAGCTCAGCCTCAAAGGTGATCG CCCGCCTCTGGCTTACGACTGGCTCAGCCTCAACCTGGGTGCTGAAGTCAGGGCACCCAAGCGGCTTGGCTGCCTACCGA TCAAGCCGCTCGAGCCGGTGTTGGCTGCACTCGCGGCTTTGCCACTGGGTGCTGCCGTGCGGGTGGTGGGCAGTGGTCCT GCGGCGGTGGAAGTCAGTTTGGCTCTCGCTGCTCGTGGTTTTGCCGTCAACCTGTCGGGACAGCCAGAGCGTGCTTTCTG GCAGGGCTTCAGGGACTCCCTGAATGCGGCAGGAGTGGTTTTGGATCCTTCGCTCATGCGTGCTCATGTGGAACTTGAGC TCCATTGCACGGGCAGCTGGGGCCCGAGTTGGCTTGCTCAAAGCGGCCTGGCCGTAGACGGCCGCGGCCGCGTGCTCACC GGAGCTGATTTGCGTTCGGTGAATGACAGCTCCGTGTTTGCTTCAGGTGACTGCGGTGTGATTGATGGCCGCGAGCGGCC CCCCAGTGGTGTTTGGGCGGTGAGAGCAGCCCCCGTTTTGGCAGCCAACTTGCAGCGTGCTGTTTCGCGTCGCCGTTTAC GGCGCTGGCGCCCGCAACCCCATGCCCTGCAATTGCTGGGCGATGGTCGCGGCCGTGCTTGGGCCCTATGGGCAGGTAGG CAGCTCGGCCCCAGCCGCCGGATTTGGCGCTGGAAACAACACCTCGATCAGCGCTTTATGGCGATGCTGCGCCCGCCCCA AATGGCCAGCGATCAGCCCATGGCCTGCAGTGGTTGCGCCGCCAAGCTTGCTGATGCGCCCTTGCGCGGGGCCCTGCAGC AGTTGGCTGGTGGCCAGCTGCCTCCTGCGGAGGATGCTGCGGTGGCTGGTGATGGTTGGCTGCAGAGCGTGGATGGGTTT CCGGCTCTTGTGGCAGACCCTTATCTCAATGGACGCCTAACGGCTCTGCATGCCAGCTCGGATCTCTGGGCTTGCGGGGC GTCGCTGCGCCATGGCCAGGCGCTTGTCACCTTGCCCCGATGTTCTGAGCTCCTGCAGCAGGAGCTGCTCGTTCAGAGCC TGGCGGGGGTGCAATCGGTGATGCCGCTGATTGGCGGGCACACCTTGCAGGCGCTGGAGGCCAGCGATCCCAGCAAGCCT TTGGCCAAACAGCTCAGCCTGGGCTTGGTGGTCAACGGTCAGCTCTCTCCCGGCCAGCTCAGCTGGGGCAAGGGACCGCT CAGGCCTGGTCATGTGTTGCTGCTCAGCCGGCCGATTGGAACAGGCGTGCTCTTCGCAGCAGCCCAGGCTGGTTCGGCGG AGCCCCAATGGCTGATAGCTGCATTGGAGGTGATGCAACAGAGCCAGGCGCCGCTGGTTGAGCTTTTGGCTGCCCATGGC TGCAGCGCTTGCACCGATGTGACAGGGTTTGGCCTCTTGGGCCATCTCAACGAGATGCTCGATGCCTCAATGGGGGTGGA TGTGCAGCTGCAGGCTGATCAAGTGCCGGCTTTGGCTGGATCCTTGGAGCTCCTGGAGGCAGGAATCACCAGCACCTTGG CCCCCAGCAATGCTGTTGCGCTGGCGAGGTGGCCAGAGCTGTTGGGAACCCGCGCGCGGTTGTTGATTGATCCGCAGACC TGCGGGCCTTTGCTAGCTGCTGTCCCTGAGCAGCAGGCTGGCCCTTGCTTGGCAGCCATGCGATTAGCCGGTTTTTCCCA GGCAGTACGGATCGGAACCGTCCAAAGCAAGGGGCTGCTTTGA
Upstream 100 bases:
>100_bases GGGATGCGGCCAGCACCGTTGCTGATCCTGGTTTGGCTAAAGAGCTTTTGGGATGGAGCACCAAGCGAGGCCTTGAGGAA TGCTGCCGTGATGGCTGGGC
Downstream 100 bases:
>100_bases AGCGTTTGTTTTGGCCACTACTGGCTCTGCTCTGGCTGCTGAGCACGGTGTTGGACAGGCGCTGGCTGGCTTTGGATCAG CGCTTGCCCTCCTGGGATCA
Product: selenophosphate synthase/FAD/NAD(P)-binding domain-containing protein
Products: NA
Alternate protein names: Selenium donor protein; Selenophosphate synthase [H]
Number of amino acids: Translated: 680; Mature: 679
Protein sequence:
>680_residues MAAGQPHRLPVSHLLLAGGGHSHALLLRQWAMRPSTRPAVEAITLVSAQPTSLYSGLIPACISGALAPKACVLDVWGLCR AAAVSFVQATVTGLDTANRQLSLKGDRPPLAYDWLSLNLGAEVRAPKRLGCLPIKPLEPVLAALAALPLGAAVRVVGSGP AAVEVSLALAARGFAVNLSGQPERAFWQGFRDSLNAAGVVLDPSLMRAHVELELHCTGSWGPSWLAQSGLAVDGRGRVLT GADLRSVNDSSVFASGDCGVIDGRERPPSGVWAVRAAPVLAANLQRAVSRRRLRRWRPQPHALQLLGDGRGRAWALWAGR QLGPSRRIWRWKQHLDQRFMAMLRPPQMASDQPMACSGCAAKLADAPLRGALQQLAGGQLPPAEDAAVAGDGWLQSVDGF PALVADPYLNGRLTALHASSDLWACGASLRHGQALVTLPRCSELLQQELLVQSLAGVQSVMPLIGGHTLQALEASDPSKP LAKQLSLGLVVNGQLSPGQLSWGKGPLRPGHVLLLSRPIGTGVLFAAAQAGSAEPQWLIAALEVMQQSQAPLVELLAAHG CSACTDVTGFGLLGHLNEMLDASMGVDVQLQADQVPALAGSLELLEAGITSTLAPSNAVALARWPELLGTRARLLIDPQT CGPLLAAVPEQQAGPCLAAMRLAGFSQAVRIGTVQSKGLL
Sequences:
>Translated_680_residues MAAGQPHRLPVSHLLLAGGGHSHALLLRQWAMRPSTRPAVEAITLVSAQPTSLYSGLIPACISGALAPKACVLDVWGLCR AAAVSFVQATVTGLDTANRQLSLKGDRPPLAYDWLSLNLGAEVRAPKRLGCLPIKPLEPVLAALAALPLGAAVRVVGSGP AAVEVSLALAARGFAVNLSGQPERAFWQGFRDSLNAAGVVLDPSLMRAHVELELHCTGSWGPSWLAQSGLAVDGRGRVLT GADLRSVNDSSVFASGDCGVIDGRERPPSGVWAVRAAPVLAANLQRAVSRRRLRRWRPQPHALQLLGDGRGRAWALWAGR QLGPSRRIWRWKQHLDQRFMAMLRPPQMASDQPMACSGCAAKLADAPLRGALQQLAGGQLPPAEDAAVAGDGWLQSVDGF PALVADPYLNGRLTALHASSDLWACGASLRHGQALVTLPRCSELLQQELLVQSLAGVQSVMPLIGGHTLQALEASDPSKP LAKQLSLGLVVNGQLSPGQLSWGKGPLRPGHVLLLSRPIGTGVLFAAAQAGSAEPQWLIAALEVMQQSQAPLVELLAAHG CSACTDVTGFGLLGHLNEMLDASMGVDVQLQADQVPALAGSLELLEAGITSTLAPSNAVALARWPELLGTRARLLIDPQT CGPLLAAVPEQQAGPCLAAMRLAGFSQAVRIGTVQSKGLL >Mature_679_residues AAGQPHRLPVSHLLLAGGGHSHALLLRQWAMRPSTRPAVEAITLVSAQPTSLYSGLIPACISGALAPKACVLDVWGLCRA AAVSFVQATVTGLDTANRQLSLKGDRPPLAYDWLSLNLGAEVRAPKRLGCLPIKPLEPVLAALAALPLGAAVRVVGSGPA AVEVSLALAARGFAVNLSGQPERAFWQGFRDSLNAAGVVLDPSLMRAHVELELHCTGSWGPSWLAQSGLAVDGRGRVLTG ADLRSVNDSSVFASGDCGVIDGRERPPSGVWAVRAAPVLAANLQRAVSRRRLRRWRPQPHALQLLGDGRGRAWALWAGRQ LGPSRRIWRWKQHLDQRFMAMLRPPQMASDQPMACSGCAAKLADAPLRGALQQLAGGQLPPAEDAAVAGDGWLQSVDGFP ALVADPYLNGRLTALHASSDLWACGASLRHGQALVTLPRCSELLQQELLVQSLAGVQSVMPLIGGHTLQALEASDPSKPL AKQLSLGLVVNGQLSPGQLSWGKGPLRPGHVLLLSRPIGTGVLFAAAQAGSAEPQWLIAALEVMQQSQAPLVELLAAHGC SACTDVTGFGLLGHLNEMLDASMGVDVQLQADQVPALAGSLELLEAGITSTLAPSNAVALARWPELLGTRARLLIDPQTC GPLLAAVPEQQAGPCLAAMRLAGFSQAVRIGTVQSKGLL
Specific function: Synthesizes selenophosphate from selenide and ATP [H]
COG id: COG1252
COG function: function code C; NADH dehydrogenase, FAD-containing subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the selenophosphate synthase 1 family. Class I subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788062, Length=316, Percent_Identity=30.379746835443, Blast_Score=94, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000728 - InterPro: IPR010918 - InterPro: IPR016188 - InterPro: IPR004536 - InterPro: IPR023061 [H]
Pfam domain/function: PF00586 AIRS; PF02769 AIRS_C [H]
EC number: =2.7.9.3 [H]
Molecular weight: Translated: 71160; Mature: 71029
Theoretical pI: Translated: 8.79; Mature: 8.79
Prosite motif: PS00626 RCC1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAGQPHRLPVSHLLLAGGGHSHALLLRQWAMRPSTRPAVEAITLVSAQPTSLYSGLIPA CCCCCCCCCCHHHHEEECCCCHHHHHHHHHHCCCCCCCHHHEEEEECCCCHHHHHHHHHH CISGALAPKACVLDVWGLCRAAAVSFVQATVTGLDTANRQLSLKGDRPPLAYDWLSLNLG HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEECCC AEVRAPKRLGCLPIKPLEPVLAALAALPLGAAVRVVGSGPAAVEVSLALAARGFAVNLSG CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEEEECCEEEECCC QPERAFWQGFRDSLNAAGVVLDPSLMRAHVELELHCTGSWGPSWLAQSGLAVDGRGRVLT CCCHHHHHHHHHCCCCCCEEECHHHHEEEEEEEEEECCCCCHHHHHHCCCEECCCCCEEE GADLRSVNDSSVFASGDCGVIDGRERPPSGVWAVRAAPVLAANLQRAVSRRRLRRWRPQP CCCCCCCCCCCEEECCCCCEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC HALQLLGDGRGRAWALWAGRQLGPSRRIWRWKQHLDQRFMAMLRPPQMASDQPMACSGCA CEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH AKLADAPLRGALQQLAGGQLPPAEDAAVAGDGWLQSVDGFPALVADPYLNGRLTALHASS HHHHCCHHHHHHHHHHCCCCCCCCCCEECCCHHHHHCCCCCCCCCCCCCCCEEEEEECCC DLWACGASLRHGQALVTLPRCSELLQQELLVQSLAGVQSVMPLIGGHTLQALEASDPSKP CHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHH LAKQLSLGLVVNGQLSPGQLSWGKGPLRPGHVLLLSRPIGTGVLFAAAQAGSAEPQWLIA HHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCHHHHHH ALEVMQQSQAPLVELLAAHGCSACTDVTGFGLLGHLNEMLDASMGVDVQLQADQVPALAG HHHHHHHCCCHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH SLELLEAGITSTLAPSNAVALARWPELLGTRARLLIDPQTCGPLLAAVPEQQAGPCLAAM HHHHHHHCHHHCCCCCCCEEHHHCHHHHCCCEEEEECCCCCCHHHHHCCCCCCCHHHHHH RLAGFSQAVRIGTVQSKGLL HHHCCHHHHEEEECCCCCCC >Mature Secondary Structure AAGQPHRLPVSHLLLAGGGHSHALLLRQWAMRPSTRPAVEAITLVSAQPTSLYSGLIPA CCCCCCCCCHHHHEEECCCCHHHHHHHHHHCCCCCCCHHHEEEEECCCCHHHHHHHHHH CISGALAPKACVLDVWGLCRAAAVSFVQATVTGLDTANRQLSLKGDRPPLAYDWLSLNLG HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEECCC AEVRAPKRLGCLPIKPLEPVLAALAALPLGAAVRVVGSGPAAVEVSLALAARGFAVNLSG CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEEEECCEEEECCC QPERAFWQGFRDSLNAAGVVLDPSLMRAHVELELHCTGSWGPSWLAQSGLAVDGRGRVLT CCCHHHHHHHHHCCCCCCEEECHHHHEEEEEEEEEECCCCCHHHHHHCCCEECCCCCEEE GADLRSVNDSSVFASGDCGVIDGRERPPSGVWAVRAAPVLAANLQRAVSRRRLRRWRPQP CCCCCCCCCCCEEECCCCCEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC HALQLLGDGRGRAWALWAGRQLGPSRRIWRWKQHLDQRFMAMLRPPQMASDQPMACSGCA CEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH AKLADAPLRGALQQLAGGQLPPAEDAAVAGDGWLQSVDGFPALVADPYLNGRLTALHASS HHHHCCHHHHHHHHHHCCCCCCCCCCEECCCHHHHHCCCCCCCCCCCCCCCEEEEEECCC DLWACGASLRHGQALVTLPRCSELLQQELLVQSLAGVQSVMPLIGGHTLQALEASDPSKP CHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHH LAKQLSLGLVVNGQLSPGQLSWGKGPLRPGHVLLLSRPIGTGVLFAAAQAGSAEPQWLIA HHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCHHHHHH ALEVMQQSQAPLVELLAAHGCSACTDVTGFGLLGHLNEMLDASMGVDVQLQADQVPALAG HHHHHHHCCCHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH SLELLEAGITSTLAPSNAVALARWPELLGTRARLLIDPQTCGPLLAAVPEQQAGPCLAAM HHHHHHHCHHHCCCCCCCEEHHHCHHHHCCCEEEEECCCCCCHHHHHCCCCCCCHHHHHH RLAGFSQAVRIGTVQSKGLL HHHCCHHHHEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA