| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
Click here to switch to the map view.
The map label for this gene is yugF [H]
Identifier: 148241242
GI number: 148241242
Start: 137199
End: 138074
Strand: Direct
Name: yugF [H]
Synonym: SynRCC307_0143
Alternate gene names: 148241242
Gene position: 137199-138074 (Clockwise)
Preceding gene: 148241240
Following gene: 148241243
Centisome position: 6.17
GC content: 62.21
Gene sequence:
>876_bases TTGGCTTGCGCCGCTGTGTCAGCGTCTTGGACTTTTCGCGGCAGCCCGATTCATTGTGTTGCTGCTGGTGATGATCAGCA GCGCCCTGCTGTGCTGCTGGTGCATGGCTTTGGTGCTTCTACCGACCACTGGCGTCACAACCTTCCGGTGCTCTCCGAGA GCTATGAGGTGCACGCCCTCGACCTGCTCGGCTTTGGCCGCAGCGCCAAGCCAGCTGGGGTGGCTTACGGGGGAGCGCTG TGGCGCGATCTGCTCTGCGCCTATACCCGCGAGCGCATTGGCCGGCCCACGGTGTTGGTGGGGAACTCCTTGGGCGGCTA TTCAGCCTTGGCTGCCGGTGCAGCTCTTGGCGATGACTGCGCTGGGGTGGTGCTGCTGAATGCAGCCGGGCCATTCAGTG AGGAAAAAGCTCCCCTGAAGGGTTGGGGCGCCATTGCCCGCAAAAGCATTGGCACGGCCATCTTGAAAAGCCCTGTGGTG CAGAGGTTGCTGTTTGAAAACCTGCGCCGTCCCGCCACCATTCGCCGCACCTTGCGGCAGGTGTACATCGATCAGACCAA CGTCGATGACGAGCTGGTGGAGGCGATCCGCCAGCCCTCCCTCGATCCAGGGGCGTTTGGCGTGTTTCGCACGGTGTTCG ACATCCCCAGCGGCCAACCCCTTGATGAGTTGTTTGCCCAGTTGAAGGCTCCACTGCTGTTGCTTTGGGGAATCCGCGAT CCCTGGATCAATGCCGCCGGGCGCCGAGAAGCATTCCAGCGCTATGCCCCTGAGGCCACGACGGAGGTGGTGCTGGAGGC AGGTCACTGCCCCCACGATGAAGTCCCCTCAATCGTTAACGCTGAGTTGCTGCAATGGCTGGGCACCTTGCCTTGA
Upstream 100 bases:
>100_bases AGGCCCATAGCGCTGAACCGCTGGCCAAGGTGATCCAGTCGCTACTGCTCAGGGGCAAGGCTCGGCGGCAAACGCCGCGT ATCCCTAGCATCTCTGGCCC
Downstream 100 bases:
>100_bases GCCATGCCTCTGCAGGAACTGTCGGCTCCCTATGACCATTCCGTGTTCACCGCTGAAAACGGTGATCTGATTCGGGTGGT GCCCGAGCGAGGCGGGCTGC
Product: alpha/beta fold family hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MACAAVSASWTFRGSPIHCVAAGDDQQRPAVLLVHGFGASTDHWRHNLPVLSESYEVHALDLLGFGRSAKPAGVAYGGAL WRDLLCAYTRERIGRPTVLVGNSLGGYSALAAGAALGDDCAGVVLLNAAGPFSEEKAPLKGWGAIARKSIGTAILKSPVV QRLLFENLRRPATIRRTLRQVYIDQTNVDDELVEAIRQPSLDPGAFGVFRTVFDIPSGQPLDELFAQLKAPLLLLWGIRD PWINAAGRREAFQRYAPEATTEVVLEAGHCPHDEVPSIVNAELLQWLGTLP
Sequences:
>Translated_291_residues MACAAVSASWTFRGSPIHCVAAGDDQQRPAVLLVHGFGASTDHWRHNLPVLSESYEVHALDLLGFGRSAKPAGVAYGGAL WRDLLCAYTRERIGRPTVLVGNSLGGYSALAAGAALGDDCAGVVLLNAAGPFSEEKAPLKGWGAIARKSIGTAILKSPVV QRLLFENLRRPATIRRTLRQVYIDQTNVDDELVEAIRQPSLDPGAFGVFRTVFDIPSGQPLDELFAQLKAPLLLLWGIRD PWINAAGRREAFQRYAPEATTEVVLEAGHCPHDEVPSIVNAELLQWLGTLP >Mature_290_residues ACAAVSASWTFRGSPIHCVAAGDDQQRPAVLLVHGFGASTDHWRHNLPVLSESYEVHALDLLGFGRSAKPAGVAYGGALW RDLLCAYTRERIGRPTVLVGNSLGGYSALAAGAALGDDCAGVVLLNAAGPFSEEKAPLKGWGAIARKSIGTAILKSPVVQ RLLFENLRRPATIRRTLRQVYIDQTNVDDELVEAIRQPSLDPGAFGVFRTVFDIPSGQPLDELFAQLKAPLLLLWGIRDP WINAAGRREAFQRYAPEATTEVVLEAGHCPHDEVPSIVNAELLQWLGTLP
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dmpD/todF/xylF esterase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: NA
Molecular weight: Translated: 31390; Mature: 31259
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MACAAVSASWTFRGSPIHCVAAGDDQQRPAVLLVHGFGASTDHWRHNLPVLSESYEVHAL CCCCEECCCEEECCCCEEEEECCCCCCCCEEEEEECCCCCCCCHHCCCCCCCCCCCEEEE DLLGFGRSAKPAGVAYGGALWRDLLCAYTRERIGRPTVLVGNSLGGYSALAAGAALGDDC EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCC AGVVLLNAAGPFSEEKAPLKGWGAIARKSIGTAILKSPVVQRLLFENLRRPATIRRTLRQ CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH VYIDQTNVDDELVEAIRQPSLDPGAFGVFRTVFDIPSGQPLDELFAQLKAPLLLLWGIRD HHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEECCCC PWINAAGRREAFQRYAPEATTEVVLEAGHCPHDEVPSIVNAELLQWLGTLP CCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure ACAAVSASWTFRGSPIHCVAAGDDQQRPAVLLVHGFGASTDHWRHNLPVLSESYEVHAL CCCEECCCEEECCCCEEEEECCCCCCCCEEEEEECCCCCCCCHHCCCCCCCCCCCEEEE DLLGFGRSAKPAGVAYGGALWRDLLCAYTRERIGRPTVLVGNSLGGYSALAAGAALGDDC EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCC AGVVLLNAAGPFSEEKAPLKGWGAIARKSIGTAILKSPVVQRLLFENLRRPATIRRTLRQ CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH VYIDQTNVDDELVEAIRQPSLDPGAFGVFRTVFDIPSGQPLDELFAQLKAPLLLLWGIRD HHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEECCCC PWINAAGRREAFQRYAPEATTEVVLEAGHCPHDEVPSIVNAELLQWLGTLP CCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9274030; 9384377 [H]