| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is bcsP31 [H]
Identifier: 147675744
GI number: 147675744
Start: 3002238
End: 3003224
Strand: Reverse
Name: bcsP31 [H]
Synonym: VC0395_A2848
Alternate gene names: 147675744
Gene position: 3003224-3002238 (Counterclockwise)
Preceding gene: 147673582
Following gene: 147674540
Centisome position: 99.31
GC content: 48.94
Gene sequence:
>987_bases ATGAAGGAAGGGAAATTCATGTCATTACCTAAAATAATCAAAATGGGTGCTATCGCAGCCGCAGTTATCGGCTCTGGTGT CGCCAGCGCACAGGATTTCATTACTATCGGTACCGGTTCGGTTACTGGTGTTTATTACCCTACGGGCGGCGCTATCTGTA AATTAGTGAACAAGGATCGTAAAGATCACAACATTCGTTGTTCCGTTGAATCGACTGGCGGCTCTATTTACAACGTCAAC ACTATCCGTTCTGGCGAATTGGATTTCGGTATTGTGCAATCAGATTGGCAGTACCATGGCTACAACGGTACGAGCGAATT TGCAGAACAAGGCCCATACAAAAAACTGCGCGCAGTATTCTCAATGCACACCGAGCCTTTCAATATCATCGCGCGTGCTG ATTCAGGCATTGAAAACGTGAAAGACCTCGCGGGCAAGCGCGTCAACATTGGTAACCCAGGCTCAGGCGATCGCGCCACT ATGCAAGTGGTGATGGATGCCTTCGGTTGGAATAACGACAGCTTTAAACTGGCGGCGGAGCTCAAAGGTTCAGAGCGCTC ACAAGCGCTGTGTGACAACAAGATTGATGCCTTCATCTACATGGTTGGCCATCCAAATGGTGCCATCAAAGAAGCGACCA CCTCTTGTGCTGCCAAACTGGTTCCCGCTACGGGCCCTGAGATCGAAAAGATCGTCGCCAACAACCCTTACTATGCATAC AGCGTTGTACCGGCTGGCATGTACAGCGGCACAGATCAAGAAGTGAAAAGCTTTGGTGTGGCAGCAACGTTAGTCACCAC GGAAGAGGTGTCTGAAGCGGTCGTCTACAACCTGACCAAAGCGGTATTTGAAAACTTCGATACCTTTACTCGCCTCCACC CAGCGTTTGCTAACTTGAAAAAAGAAGACATGGTAACCGCAGGGAACTCTATCCCACTCCACCCAGGTGCAGTGAAATAC TACAAAGAAGCGGGTTTGATTAAGTAA
Upstream 100 bases:
>100_bases GGTATGATTCCGCTGCTTTATCGTTCTTTGCCGCGAATAAAGCAACGTTTCTCAGGCAGGAAAGCTCGAAGCCGCGCTGA CGCTTTGGGTTACATTACCA
Downstream 100 bases:
>100_bases CGCGTTTCAACTGAGAAGGGAGAGGAAATCCTCTCCCGTAAAAATAACAAAAGAGGAGGCAAATGCCTCCTCCTTAGTAT CACGTTCACGTTTGGTGATA
Product: immunogenic protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 328; Mature: 328
Protein sequence:
>328_residues MKEGKFMSLPKIIKMGAIAAAVIGSGVASAQDFITIGTGSVTGVYYPTGGAICKLVNKDRKDHNIRCSVESTGGSIYNVN TIRSGELDFGIVQSDWQYHGYNGTSEFAEQGPYKKLRAVFSMHTEPFNIIARADSGIENVKDLAGKRVNIGNPGSGDRAT MQVVMDAFGWNNDSFKLAAELKGSERSQALCDNKIDAFIYMVGHPNGAIKEATTSCAAKLVPATGPEIEKIVANNPYYAY SVVPAGMYSGTDQEVKSFGVAATLVTTEEVSEAVVYNLTKAVFENFDTFTRLHPAFANLKKEDMVTAGNSIPLHPGAVKY YKEAGLIK
Sequences:
>Translated_328_residues MKEGKFMSLPKIIKMGAIAAAVIGSGVASAQDFITIGTGSVTGVYYPTGGAICKLVNKDRKDHNIRCSVESTGGSIYNVN TIRSGELDFGIVQSDWQYHGYNGTSEFAEQGPYKKLRAVFSMHTEPFNIIARADSGIENVKDLAGKRVNIGNPGSGDRAT MQVVMDAFGWNNDSFKLAAELKGSERSQALCDNKIDAFIYMVGHPNGAIKEATTSCAAKLVPATGPEIEKIVANNPYYAY SVVPAGMYSGTDQEVKSFGVAATLVTTEEVSEAVVYNLTKAVFENFDTFTRLHPAFANLKKEDMVTAGNSIPLHPGAVKY YKEAGLIK >Mature_328_residues MKEGKFMSLPKIIKMGAIAAAVIGSGVASAQDFITIGTGSVTGVYYPTGGAICKLVNKDRKDHNIRCSVESTGGSIYNVN TIRSGELDFGIVQSDWQYHGYNGTSEFAEQGPYKKLRAVFSMHTEPFNIIARADSGIENVKDLAGKRVNIGNPGSGDRAT MQVVMDAFGWNNDSFKLAAELKGSERSQALCDNKIDAFIYMVGHPNGAIKEATTSCAAKLVPATGPEIEKIVANNPYYAY SVVPAGMYSGTDQEVKSFGVAATLVTTEEVSEAVVYNLTKAVFENFDTFTRLHPAFANLKKEDMVTAGNSIPLHPGAVKY YKEAGLIK
Specific function: Unknown
COG id: COG2358
COG function: function code R; TRAP-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015168 - InterPro: IPR011852 [H]
Pfam domain/function: PF09084 NMT1 [H]
EC number: NA
Molecular weight: Translated: 35255; Mature: 35255
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEGKFMSLPKIIKMGAIAAAVIGSGVASAQDFITIGTGSVTGVYYPTGGAICKLVNKDR CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCHHHHHHHHCCC KDHNIRCSVESTGGSIYNVNTIRSGELDFGIVQSDWQYHGYNGTSEFAEQGPYKKLRAVF CCCCEEEEEECCCCEEEEEEEEECCCCCEEEEECCCEECCCCCHHHHHHCCCHHHHHHHH SMHTEPFNIIARADSGIENVKDLAGKRVNIGNPGSGDRATMQVVMDAFGWNNDSFKLAAE HHCCCCEEEEEECCCCHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEE LKGSERSQALCDNKIDAFIYMVGHPNGAIKEATTSCAAKLVPATGPEIEKIVANNPYYAY CCCCCHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHEECCCCCCCHHHHHCCCCEEEE SVVPAGMYSGTDQEVKSFGVAATLVTTEEVSEAVVYNLTKAVFENFDTFTRLHPAFANLK EEECCCCCCCCHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC KEDMVTAGNSIPLHPGAVKYYKEAGLIK HHHHEECCCCCCCCCCHHHHHHHCCCCC >Mature Secondary Structure MKEGKFMSLPKIIKMGAIAAAVIGSGVASAQDFITIGTGSVTGVYYPTGGAICKLVNKDR CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCHHHHHHHHCCC KDHNIRCSVESTGGSIYNVNTIRSGELDFGIVQSDWQYHGYNGTSEFAEQGPYKKLRAVF CCCCEEEEEECCCCEEEEEEEEECCCCCEEEEECCCEECCCCCHHHHHHCCCHHHHHHHH SMHTEPFNIIARADSGIENVKDLAGKRVNIGNPGSGDRATMQVVMDAFGWNNDSFKLAAE HHCCCCEEEEEECCCCHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEE LKGSERSQALCDNKIDAFIYMVGHPNGAIKEATTSCAAKLVPATGPEIEKIVANNPYYAY CCCCCHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHEECCCCCCCHHHHHCCCCEEEE SVVPAGMYSGTDQEVKSFGVAATLVTTEEVSEAVVYNLTKAVFENFDTFTRLHPAFANLK EEECCCCCCCCHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC KEDMVTAGNSIPLHPGAVKYYKEAGLIK HHHHEECCCCCCCCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3133283 [H]