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The map label for this gene is tcpF

Identifier: 147675724

GI number: 147675724

Start: 389413

End: 390429

Strand: Direct

Name: tcpF

Synonym: VC0395_A0362

Alternate gene names: 147675724

Gene position: 389413-390429 (Clockwise)

Preceding gene: 147675450

Following gene: 147673596

Centisome position: 12.88

GC content: 34.61

Gene sequence:

>1017_bases
ATGAGATATAAAAAAACCTTAATGTTATCAATCATGATTACATCATTTAACTCATTTGCATTTAATGATAATTATAGTTC
AACCAGTACGGTTTATGCTACGTCTAATGAAGCTACGGATTCAAGGGGGAGTGAGCACCTTAGATACCCTTATTTAGAGT
GTATCAAAATCGGTATGAGTAGAGATTATCTTGAAAACTGTGTGAAAGTATCTTTTCCAACCTCTCAAGATATGTTTTAT
GACGCATACCCATCGACAGAATCTGACGGTGCTAAGACAAGAACAAAAGAAGATTTCTCTGCTCGGCTTTTAGCTGGTGA
TTATGATAGTTTACAGAAATTGTATATAGATTTTTATCTTGCTCAAACGACTTTCGATTGGGAAATACCGACAAGGGATC
AAATTGAGACACTAGTTAATTATGCTAATGAAGGTAAATTGTCTACGGCACTTAATCAAGAGTATATTACAGGTCGATTT
CTTACAAAAGAAAATGGTCGATATGATATTGTGAATGTTGGTGGTGTTCCAGATAATACTCCAGTTAAACTACCAGCTAT
TGTTTCTAAACGCGGACTAATGGGTACAACTTCTGTAGTTAATGCAATTCCCAATGAAATTTATCCTCATATCAAAGTTT
ATGAAGGGACTCTTAGTCGTTTAAAACCTGGTGGTGCAATGATCGCAGTATTAGAATATGACGTAAATGAATTAAGTAAG
CACGGGTATACCAATCTGTGGGATGTGCAGTTTAAGGTTCTTGTTGGAGTTCCACATGCAGAAACAGGAGTTATCTATGA
CCCTGTTTATGAAGAAACTGTCAAACCATATCAGCCTAGTAACAACTTAACGGGTAAGAAGTTGTATAATGTATCTACAA
ATGACATGCATAATGGTTACAAGTGGTCAAATACTATGTTCTCAAATTCTAATTATAAAACGCAAATATTATTAACTAAA
GGAGATGGAAGTGGTGTGAAACTGTATAGCAAAGCATATTCAGAGAACTTTAAATAA

Upstream 100 bases:

>100_bases
AAATATTTCACTAATAACGTTGGCGTTGTCTGTGATTTGGATCTTCGGTGCGATCTTTTCGCTCGTTGATAAACTAAGTT
CATCTTTATAGTGAGGATAT

Downstream 100 bases:

>100_bases
AATAGATAAGATAACAGCCACATTCGTGGCTGTTATCTTATCTCAAAAAACATAAAATAACATGAGTTACTTTATGTTTT
TCTTATGTAATACGTCTGTA

Product: toxin co-regulated pilus biosynthesis protein F

Products: NA

Alternate protein names: TCP pilus biosynthesis protein tcpF

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMSRDYLENCVKVSFPTSQDMFY
DAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYLAQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRF
LTKENGRYDIVNVGGVPDNTPVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK
HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGYKWSNTMFSNSNYKTQILLTK
GDGSGVKLYSKAYSENFK

Sequences:

>Translated_338_residues
MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMSRDYLENCVKVSFPTSQDMFY
DAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYLAQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRF
LTKENGRYDIVNVGGVPDNTPVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK
HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGYKWSNTMFSNSNYKTQILLTK
GDGSGVKLYSKAYSENFK
>Mature_338_residues
MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMSRDYLENCVKVSFPTSQDMFY
DAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYLAQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRF
LTKENGRYDIVNVGGVPDNTPVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK
HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGYKWSNTMFSNSNYKTQILLTK
GDGSGVKLYSKAYSENFK

Specific function: Involved in TCP pilus biogenesis. May be a channel protein

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TCPF_VIBC3 (A5F383)

Other databases:

- EMBL:   AF325733
- EMBL:   CP000627
- EMBL:   CP001235
- STRING:   A5F383
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0362
- HOGENOM:   HBG739734
- OMA:   KPYQPSD
- ProtClustDB:   CLSK793814
- BioCyc:   VCHO345073:VC0395_A0362-MONOMER
- InterPro:   IPR009405
- PIRSF:   PIRSF020763

Pfam domain/function: PF06340 TcpF

EC number: NA

Molecular weight: Translated: 38211; Mature: 38211

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMS
CCCHHEEEEEEEEECCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCC
RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL
HHHHHHHEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHEEEEE
AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT
EEEEEECCCCCHHHHHHHHHHCCCCCEEHHHCCHHEEEEEEECCCCCEEEEEECCCCCCC
PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK
CEECHHHHCCCCCCCHHHHHHHCCHHHCCCEEEEECHHHHCCCCCEEEEEEECCHHHHHH
HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGY
CCCCCEEEEEEEEEEECCCCCCCCEECCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCE
KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK
EECCEEECCCCEEEEEEEECCCCCCEEEEEHHHCCCCC
>Mature Secondary Structure
MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMS
CCCHHEEEEEEEEECCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCC
RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL
HHHHHHHEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHEEEEE
AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT
EEEEEECCCCCHHHHHHHHHHCCCCCEEHHHCCHHEEEEEEECCCCCEEEEEECCCCCCC
PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK
CEECHHHHCCCCCCCHHHHHHHCCHHHCCCEEEEECHHHHCCCCCEEEEEEECCHHHHHH
HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGY
CCCCCEEEEEEEEEEECCCCCCCCEECCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCE
KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK
EECCEEECCCCEEEEEEEECCCCCCEEEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11179381