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The map label for this gene is fimZ [C]

Identifier: 147675703

GI number: 147675703

Start: 11693

End: 12496

Strand: Direct

Name: fimZ [C]

Synonym: VC0395_A0016

Alternate gene names: 147675703

Gene position: 11693-12496 (Clockwise)

Preceding gene: 147675116

Following gene: 147673691

Centisome position: 0.39

GC content: 51.62

Gene sequence:

>804_bases
GTGCGCATGCCGATCACGACTCAAGAGTATCTCGCATTAGGTGACGCGATTGCGGCGTTAAAGACGCCGCAATTTACGTC
GCATCTTGTGGCAGTGCTACGCTGTATTGCCGATTTTGATTGCGCGGTGATCTTGGGCTATCGTCCCAACAAACATCCGA
TTTATCTGTATGACTCGCTCTCGATCCAGCGTGAGCTGCTGTTTCAGCGTTATCTGACTCATGCTTATCTTGATGATCCT
TTCTATAGCGCTTTGCAGCACAACACGCGCTCAGGGGTGTTTCATCTTTCCGATTTAATGCCGCTCAATCCACAGCAAAA
AGCCTATCAACACCAGTTTTATGCGCAAACCGGTTGGCAAGATGAAGTGAGTTTGGTGGTCAATCTTGATGGCGAGCGTT
CGATTGTGGTGTATCTCGGCTGCTTTAAGCCGCGCTCTTTTCCACGCGAACAGATTGCCGCGTTGCAACAGCGGTTTACC
GTGTTGCAAGCCTTGTGTCAGCAGCATTGGCAGCAGCAGCCACTGCGGTTAGCGGAAAGTGCGCAGCCAAGCCAAGAGTT
ACGGACTTGGGTTGAACAGGCGATCCAGAGTTTTGGCGCGCAGCGTTTAAGCCCGCGAGAGCAGGAGATCACCGCACTGC
TCATCCAAGGTTTAGACTCACAAGAAATTGCCGATGCGCTGGCCATCAGCCACGGCACAGTCAAAAATCATCGTAAACGC
ATCTATGCGCAGCTGCATGTCAGCTCGTTAAGCGAGCTGTTTCAACTGTTTCTCAATCATCTGATTGGCGCAGCCGCGGA
TTAG

Upstream 100 bases:

>100_bases
TTGTGCGCTTTGCTTTTACGCCCTGCAACTCAAGCGAGTTTGGGATAGAGCTTCGAGTCTGGATTGGGCATACTGCCACT
TTCTCGGCTGAATGGGTGGA

Downstream 100 bases:

>100_bases
GCTGTCTCTCTTCCTTCGGTCATCAATCACCAAGATTGTCCCTTTAGGGACATCGCGCCTCAGGTTTAAAGTTGGTTACT
CTGCTTGCCAAGACTTTTGG

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MRMPITTQEYLALGDAIAALKTPQFTSHLVAVLRCIADFDCAVILGYRPNKHPIYLYDSLSIQRELLFQRYLTHAYLDDP
FYSALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERSIVVYLGCFKPRSFPREQIAALQQRFT
VLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRLSPREQEITALLIQGLDSQEIADALAISHGTVKNHRKR
IYAQLHVSSLSELFQLFLNHLIGAAAD

Sequences:

>Translated_267_residues
MRMPITTQEYLALGDAIAALKTPQFTSHLVAVLRCIADFDCAVILGYRPNKHPIYLYDSLSIQRELLFQRYLTHAYLDDP
FYSALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERSIVVYLGCFKPRSFPREQIAALQQRFT
VLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRLSPREQEITALLIQGLDSQEIADALAISHGTVKNHRKR
IYAQLHVSSLSELFQLFLNHLIGAAAD
>Mature_267_residues
MRMPITTQEYLALGDAIAALKTPQFTSHLVAVLRCIADFDCAVILGYRPNKHPIYLYDSLSIQRELLFQRYLTHAYLDDP
FYSALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQDEVSLVVNLDGERSIVVYLGCFKPRSFPREQIAALQQRFT
VLQALCQQHWQQQPLRLAESAQPSQELRTWVEQAIQSFGAQRLSPREQEITALLIQGLDSQEIADALAISHGTVKNHRKR
IYAQLHVSSLSELFQLFLNHLIGAAAD

Specific function: Unknown

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 30503; Mature: 30503

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMPITTQEYLALGDAIAALKTPQFTSHLVAVLRCIADFDCAVILGYRPNKHPIYLYDSL
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEECH
SIQRELLFQRYLTHAYLDDPFYSALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQ
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEHHHCCCCCCHHHHHHHHHHHHCCCC
DEVSLVVNLDGERSIVVYLGCFKPRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAES
CCEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AQPSQELRTWVEQAIQSFGAQRLSPREQEITALLIQGLDSQEIADALAISHGTVKNHRKR
CCCHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHH
IYAQLHVSSLSELFQLFLNHLIGAAAD
HHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRMPITTQEYLALGDAIAALKTPQFTSHLVAVLRCIADFDCAVILGYRPNKHPIYLYDSL
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEECH
SIQRELLFQRYLTHAYLDDPFYSALQHNTRSGVFHLSDLMPLNPQQKAYQHQFYAQTGWQ
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEHHHCCCCCCHHHHHHHHHHHHCCCC
DEVSLVVNLDGERSIVVYLGCFKPRSFPREQIAALQQRFTVLQALCQQHWQQQPLRLAES
CCEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AQPSQELRTWVEQAIQSFGAQRLSPREQEITALLIQGLDSQEIADALAISHGTVKNHRKR
CCCHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHH
IYAQLHVSSLSELFQLFLNHLIGAAAD
HHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7789814 [H]