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The map label for this gene is yceD [C]

Identifier: 147675692

GI number: 147675692

Start: 1731623

End: 1732147

Strand: Reverse

Name: yceD [C]

Synonym: VC0395_A1612

Alternate gene names: 147675692

Gene position: 1732147-1731623 (Counterclockwise)

Preceding gene: 147673109

Following gene: 147674886

Centisome position: 57.28

GC content: 41.9

Gene sequence:

>525_bases
ATGCAAAAGGTAAAAATACCGCGAACGGTTGATCCGGCTAAAGCCGCTCAGAAAAGATTAGACTTTGATGGCATCATCCA
AGTTAATTTGTTCAAGCGCTTAGAGGAGTCAGTCGCAGGCGTTAAACGCGACGCTGAAGTTTCATTGTCATTTGAGATTG
ATGAACAGCAACTGGTTGTTATCTCTGGTAAAGCTAACATCGAAGTTGATTTAGAGTGTCAGCGCTGTAACGAGGTTTTC
GCACACGAGTGTGAAGTTGAATTTACTTATACCCCTTACTTAGGTCGTAAAAGTGAAGAAGACGCCCCAGACGAGTATGA
TTTGGTAGATCTAAACGAGTTTGGTGAGGTTGACCTAGTTCAGTTAGTTGAAGACGAGTTCATCTTGAATTTGCCTCAAG
TTGCGATGCATGACGAAGCGGATTGTAGCGTTGATTCAGACAATTTGGTGTTTGGTGAACTTCCAGAAGAAGTTTTGGAA
GAGAAGCCGAATCCATTCGATGTTTTAAAAAGCTTGAAGAAGTAA

Upstream 100 bases:

>100_bases
ATGCGCTGTTCATAATGCTCTCTGTGGAAAGGGAAAAAAAACCAAGTTTTTTGCCTTTTTCTTTGACTAAATCTGTTTTG
GAAGATAATATTCGCGCCCT

Downstream 100 bases:

>100_bases
TTCGCTAAGCATTCTTAACATAGGAGTAGGGTCCATGGCCGTACAACAAAACCGTAAAACACGTTCAAGACGTGGCATGC
GTCGTTCACACGATGCGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MQKVKIPRTVDPAKAAQKRLDFDGIIQVNLFKRLEESVAGVKRDAEVSLSFEIDEQQLVVISGKANIEVDLECQRCNEVF
AHECEVEFTYTPYLGRKSEEDAPDEYDLVDLNEFGEVDLVQLVEDEFILNLPQVAMHDEADCSVDSDNLVFGELPEEVLE
EKPNPFDVLKSLKK

Sequences:

>Translated_174_residues
MQKVKIPRTVDPAKAAQKRLDFDGIIQVNLFKRLEESVAGVKRDAEVSLSFEIDEQQLVVISGKANIEVDLECQRCNEVF
AHECEVEFTYTPYLGRKSEEDAPDEYDLVDLNEFGEVDLVQLVEDEFILNLPQVAMHDEADCSVDSDNLVFGELPEEVLE
EKPNPFDVLKSLKK
>Mature_174_residues
MQKVKIPRTVDPAKAAQKRLDFDGIIQVNLFKRLEESVAGVKRDAEVSLSFEIDEQQLVVISGKANIEVDLECQRCNEVF
AHECEVEFTYTPYLGRKSEEDAPDEYDLVDLNEFGEVDLVQLVEDEFILNLPQVAMHDEADCSVDSDNLVFGELPEEVLE
EKPNPFDVLKSLKK

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yceD [H]

Homologues:

Organism=Escherichia coli, GI1787329, Length=174, Percent_Identity=48.8505747126437, Blast_Score=176, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003772 [H]

Pfam domain/function: PF02620 DUF177 [H]

EC number: NA

Molecular weight: Translated: 19777; Mature: 19777

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKVKIPRTVDPAKAAQKRLDFDGIIQVNLFKRLEESVAGVKRDAEVSLSFEIDEQQLVV
CCCCCCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEE
ISGKANIEVDLECQRCNEVFAHECEVEFTYTPYLGRKSEEDAPDEYDLVDLNEFGEVDLV
EECCCCEEEEEEHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCHHH
QLVEDEFILNLPQVAMHDEADCSVDSDNLVFGELPEEVLEEKPNPFDVLKSLKK
HHHHHHHHCCCCHHHCCCCCCCCCCCCCEEECCCCHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MQKVKIPRTVDPAKAAQKRLDFDGIIQVNLFKRLEESVAGVKRDAEVSLSFEIDEQQLVV
CCCCCCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEE
ISGKANIEVDLECQRCNEVFAHECEVEFTYTPYLGRKSEEDAPDEYDLVDLNEFGEVDLV
EECCCCEEEEEEHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCHHH
QLVEDEFILNLPQVAMHDEADCSVDSDNLVFGELPEEVLEEKPNPFDVLKSLKK
HHHHHHHHCCCCHHHCCCCCCCCCCCCCEEECCCCHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]