| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147675630
Identifier: 147675630
GI number: 147675630
Start: 1159372
End: 1160088
Strand: Reverse
Name: 147675630
Synonym: VC0395_A1103
Alternate gene names: NA
Gene position: 1160088-1159372 (Counterclockwise)
Preceding gene: 147673268
Following gene: 147673795
Centisome position: 38.36
GC content: 43.24
Gene sequence:
>717_bases ATGCACTCAATGCCTACGCTTACAAAAAATGTGAGGAGAAGTGCCATGAAATGGATATTTACTTGCGTGATGAGCTTACT TTTTACCGCCTCATCACCGTTTCTCAGTGCAAATAATCTTAGCCGTGCCGACTTAACTCAATTTGATCAACCTTTATTGC TCGGCGACTGGTATTTGCTTAATCCCAACCCAGAGCAATCTAGCGAAAACTTTCGAGTCATTAAGCTCAGTTTGGCTTCG GACTACCATTTCTCGATTGATATCCAAAAGAAAGATTTCAGTGTTGACCACTGGAATGGCGCTTATTCTGCAGATGAGAA AACCCTTATTCTCGGCCTAGATAGTTCAGATCCCCAAACTTACCAGTATGAAAATAACCATCATTTGCTGACATTGAATG GTGTAACCTTCACTAAAGGTTTACCCAATACTTTGGCCGGTAGCTGGAGCAGTGCACATATCAAAGATCTTGATGGCGAA AGCCTTGACCAAAGCCTGATCCAATTAACCTTACAGCCAGATTTTATCTTCTCTTTCCACATCACTAATCAAGATGGTAA CGAGGCCACCCATCGCGGCGTCTATTACACTGAAGGAAATCGCTTGGTTTTGCTCTATTCGGAAGGTGAGCACGATACCC GTTATGTGCTCGATCAAGATAGACTCACCTTGGAAATTGATGACAGCATGACGGTCGTCATGAACCGCGTGCAATAA
Upstream 100 bases:
>100_bases TTTACTTTATCTTTAATCAAAACGGACCTTATGGTCCGTTTTTTTACACTTTTTTAATTCGTAAAATTAATGTGATGAAC ATCAAATAATTTCGCATTTC
Downstream 100 bases:
>100_bases CACTCATGCGGTATGCCACCTGTTTTGATAATGGGCGGCCAAAAAGCAAAAGTGGCAGGGAGTTTACAGATAAACTCCCT GTTTTTTTGCGTTCAGGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 238; Mature: 238
Protein sequence:
>238_residues MHSMPTLTKNVRRSAMKWIFTCVMSLLFTASSPFLSANNLSRADLTQFDQPLLLGDWYLLNPNPEQSSENFRVIKLSLAS DYHFSIDIQKKDFSVDHWNGAYSADEKTLILGLDSSDPQTYQYENNHHLLTLNGVTFTKGLPNTLAGSWSSAHIKDLDGE SLDQSLIQLTLQPDFIFSFHITNQDGNEATHRGVYYTEGNRLVLLYSEGEHDTRYVLDQDRLTLEIDDSMTVVMNRVQ
Sequences:
>Translated_238_residues MHSMPTLTKNVRRSAMKWIFTCVMSLLFTASSPFLSANNLSRADLTQFDQPLLLGDWYLLNPNPEQSSENFRVIKLSLAS DYHFSIDIQKKDFSVDHWNGAYSADEKTLILGLDSSDPQTYQYENNHHLLTLNGVTFTKGLPNTLAGSWSSAHIKDLDGE SLDQSLIQLTLQPDFIFSFHITNQDGNEATHRGVYYTEGNRLVLLYSEGEHDTRYVLDQDRLTLEIDDSMTVVMNRVQ >Mature_238_residues MHSMPTLTKNVRRSAMKWIFTCVMSLLFTASSPFLSANNLSRADLTQFDQPLLLGDWYLLNPNPEQSSENFRVIKLSLAS DYHFSIDIQKKDFSVDHWNGAYSADEKTLILGLDSSDPQTYQYENNHHLLTLNGVTFTKGLPNTLAGSWSSAHIKDLDGE SLDQSLIQLTLQPDFIFSFHITNQDGNEATHRGVYYTEGNRLVLLYSEGEHDTRYVLDQDRLTLEIDDSMTVVMNRVQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27117; Mature: 27117
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSMPTLTKNVRRSAMKWIFTCVMSLLFTASSPFLSANNLSRADLTQFDQPLLLGDWYLL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHCCCCEEEEEEEEE NPNPEQSSENFRVIKLSLASDYHFSIDIQKKDFSVDHWNGAYSADEKTLILGLDSSDPQT CCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCE YQYENNHHLLTLNGVTFTKGLPNTLAGSWSSAHIKDLDGESLDQSLIQLTLQPDFIFSFH EEEECCEEEEEECCEEEECCCCHHHCCCCCCCEEECCCCCHHHHHEEEEEECCCEEEEEE ITNQDGNEATHRGVYYTEGNRLVLLYSEGEHDTRYVLDQDRLTLEIDDSMTVVMNRVQ EECCCCCCHHHCCEEEECCCEEEEEEECCCCCEEEEEECCCEEEEECCCEEEEEEECC >Mature Secondary Structure MHSMPTLTKNVRRSAMKWIFTCVMSLLFTASSPFLSANNLSRADLTQFDQPLLLGDWYLL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHCCCCEEEEEEEEE NPNPEQSSENFRVIKLSLASDYHFSIDIQKKDFSVDHWNGAYSADEKTLILGLDSSDPQT CCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCE YQYENNHHLLTLNGVTFTKGLPNTLAGSWSSAHIKDLDGESLDQSLIQLTLQPDFIFSFH EEEECCEEEEEECCEEEECCCCHHHCCCCCCCEEECCCCCHHHHHEEEEEECCCEEEEEE ITNQDGNEATHRGVYYTEGNRLVLLYSEGEHDTRYVLDQDRLTLEIDDSMTVVMNRVQ EECCCCCCHHHCCEEEECCCEEEEEEECCCCCEEEEEECCCEEEEECCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA